SRR3552878_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552878_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	325910
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3604	1.1058267619895061	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCC	2245	0.68884047743242	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGT	2159	0.662452824399374	No Hit
AATCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCT	2156	0.6615323248749655	No Hit
CTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTGCT	1844	0.5658003743364732	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	894	0.27430885827375656	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	654	0.2006688963210702	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	629	0.19299806695099875	No Hit
AAACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCT	615	0.1887024025037587	No Hit
AATGACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTT	530	0.16262158264551563	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCT	500	0.15341658740142985	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTT	441	0.13531343008806113	No Hit
AACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTG	434	0.1331655978644411	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	403	0.12365376944555245	No Hit
CCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTGC	385	0.11813077229910099	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTGCTCATTC	358	0.10984627657942377	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTAT	355	0.10892577705501519	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	343	0.10524377895738087	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCAG	25	3.8846345E-5	45.0	25
CTTCGAC	20	7.0258405E-4	45.0	13
ATCTACG	25	3.8846345E-5	45.0	1
CGCATAG	25	3.8846345E-5	45.0	1
TAGAACG	20	7.0258405E-4	45.0	1
CCTCGCA	25	3.8846345E-5	45.0	37
TAGCCGT	25	3.8846345E-5	45.0	44
CCGTCAA	20	7.0258405E-4	45.0	13
GTTACCG	25	3.8846345E-5	45.0	1
CTCGGGT	20	7.0258405E-4	45.0	4
AGGCACG	20	7.0258405E-4	45.0	1
TGCGACG	20	7.0258405E-4	45.0	1
CCATACG	20	7.0258405E-4	45.0	1
CATACGA	80	0.0	45.0	18
CTCGCGG	45	3.8380676E-10	45.0	2
TATAGTT	20	7.0258405E-4	45.0	23
TTCGGTC	20	7.0258405E-4	45.0	34
ACGTATA	20	7.0258405E-4	45.0	13
ACCAACG	20	7.0258405E-4	45.0	1
ATCGGTC	25	3.8846345E-5	45.0	25