SRR3552877_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552877_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	635708
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTGCT	5584	0.8783907076834019	TruSeq Adapter, Index 20 (95% over 22bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCC	3098	0.4873306612469876	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGT	2803	0.4409257080294726	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2746	0.43195932723829183	No Hit
AATCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCT	2597	0.4085208932402927	No Hit
AAACTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCT	1029	0.16186676901973862	TruSeq Adapter, Index 27 (95% over 21bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	956	0.1503835094099807	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	783	0.12316975718411599	No Hit
CCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTGC	778	0.12238323255331063	TruSeq Adapter, Index 27 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCGCG	35	1.2107739E-7	45.000004	1
TCACGCG	20	7.030905E-4	45.0	1
AACCCGC	25	3.888832E-5	45.0	45
GACACGA	25	3.888832E-5	45.0	25
CGCATCG	25	3.888832E-5	45.0	21
AAGCGAC	20	7.030905E-4	45.0	14
ATCGTAG	25	3.888832E-5	45.0	1
CTAACCG	25	3.888832E-5	45.0	1
TGACCGG	40	6.8066583E-9	45.0	2
TATCTCG	20	7.030905E-4	45.0	1
CGGGCTA	40	6.8066583E-9	45.0	6
GAGCCGT	20	7.030905E-4	45.0	23
CGTAACG	45	3.8380676E-10	45.0	1
TTACGAG	20	7.030905E-4	45.0	1
AACTCGA	20	7.030905E-4	45.0	11
ACTCCCG	25	3.888832E-5	45.0	1
TCGACGG	40	6.8066583E-9	45.0	2
GCATCGC	40	6.8066583E-9	45.0	22
AATCGGC	20	7.030905E-4	45.0	27
TATCCGG	50	2.1827873E-11	45.0	2