SRR3552874_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552874_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	824245
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGCT	6240	0.7570564577279814	Illumina Single End Adapter 1 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3814	0.4627264951561732	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCC	2493	0.30245861364036175	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGT	2408	0.2921461458668236	No Hit
AATCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCT	2298	0.27880059933636236	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1735	0.21049566573045636	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1411	0.17118696504073425	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	1265	0.1534737851003039	Illumina Single End Adapter 1 (95% over 21bp)
AAACTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCT	1258	0.1526245230483655	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	842	0.10215409253316672	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATCG	20	7.0321246E-4	45.0	1
AAATCCG	20	7.0321246E-4	45.0	1
CGTATAG	20	7.0321246E-4	45.0	1
CGACGTG	25	3.889842E-5	45.0	13
AGATACG	25	3.889842E-5	45.0	1
ATTACCG	45	3.8380676E-10	45.0	1
CACGCTA	20	7.0321246E-4	45.0	42
TCCTCGC	25	3.889842E-5	45.0	11
ATTAACG	40	6.8102963E-9	45.0	1
TCGGCCA	20	7.0321246E-4	45.0	14
ATCGTAG	25	3.889842E-5	45.0	1
CGCTATC	20	7.0321246E-4	45.0	18
CTACGCG	20	7.0321246E-4	45.0	1
GTCGTCG	20	7.0321246E-4	45.0	25
GCTAGCG	40	6.8102963E-9	45.0	1
TACTCGA	20	7.0321246E-4	45.0	32
TCATCGA	25	3.889842E-5	45.0	16
CGTCGAA	20	7.0321246E-4	45.0	31
CCGAACT	20	7.0321246E-4	45.0	11
TAAGCGA	45	3.8380676E-10	45.0	13