SRR3552873_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552873_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	494329
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGCT	5524	1.1174743945833645	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5002	1.011876705594857	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCC	2242	0.4535440971498739	No Hit
AATCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCT	2000	0.40458884669926304	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGT	1987	0.40195901919571786	No Hit
AAACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCT	1696	0.3430913420009751	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1256	0.2540817957271372	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1056	0.21362291105721087	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTT	1016	0.20553113412322563	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	836	0.16911813792029196	No Hit
CCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC	757	0.15313687847567106	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	626	0.12663630901686934	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	570	0.11530782130928997	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCT	548	0.11085734399559807	No Hit
AATGACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTT	527	0.10660916110525581	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	508	0.10276556706161281	No Hit
AACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTG	504	0.10195638936821429	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATACA	35	1.2100463E-7	45.000004	31
GGTACGA	65	0.0	45.000004	9
GTAGCAC	25	3.8875678E-5	45.000004	35
ATATACG	25	3.8875678E-5	45.000004	1
CGTAGCG	25	3.8875678E-5	45.000004	1
CGTAGCA	25	3.8875678E-5	45.000004	34
CACTACG	25	3.8875678E-5	45.000004	1
CATCGCC	25	3.8875678E-5	45.000004	23
GGCATAT	25	3.8875678E-5	45.000004	8
TCATACG	25	3.8875678E-5	45.000004	1
GTAAGCG	25	3.8875678E-5	45.000004	1
CAATACG	50	2.1827873E-11	45.000004	1
GCACTAG	25	3.8875678E-5	45.000004	1
TTCTACG	40	6.8012014E-9	45.0	1
AATCCCG	20	7.029382E-4	45.0	1
CTCACGA	20	7.029382E-4	45.0	24
TGCCAAC	20	7.029382E-4	45.0	12
CGACGGT	20	7.029382E-4	45.0	28
CGACGAT	20	7.029382E-4	45.0	22
CCGATCA	20	7.029382E-4	45.0	17