##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552873_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 494329 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.10403799898448 31.0 31.0 33.0 28.0 34.0 2 31.38778627189584 31.0 31.0 34.0 30.0 34.0 3 31.583427231661506 31.0 31.0 34.0 30.0 34.0 4 35.52944091890219 37.0 35.0 37.0 33.0 37.0 5 34.90132280323429 35.0 35.0 37.0 32.0 37.0 6 35.006076924477426 35.0 35.0 37.0 32.0 37.0 7 34.94826927006103 36.0 35.0 37.0 32.0 37.0 8 35.402375745707815 37.0 35.0 37.0 33.0 37.0 9 36.859508545927916 39.0 37.0 39.0 33.0 39.0 10 36.325961050231726 38.0 35.0 39.0 32.0 39.0 11 36.51287907446255 38.0 35.0 39.0 32.0 39.0 12 36.15574243064842 37.0 35.0 39.0 32.0 39.0 13 35.74876853269786 37.0 35.0 39.0 30.0 39.0 14 36.79866445221705 39.0 35.0 40.0 31.0 41.0 15 36.830157648044114 38.0 35.0 40.0 32.0 41.0 16 36.77117466302806 38.0 35.0 40.0 32.0 41.0 17 36.687643249738535 38.0 35.0 40.0 32.0 41.0 18 36.62236890815631 38.0 35.0 40.0 31.0 41.0 19 36.68254947615859 38.0 35.0 40.0 31.0 41.0 20 36.57859037199921 38.0 35.0 40.0 31.0 41.0 21 36.646061631019016 38.0 35.0 40.0 31.0 41.0 22 36.65324308304793 38.0 35.0 40.0 31.0 41.0 23 36.556250998828716 38.0 35.0 40.0 31.0 41.0 24 36.07677477954965 38.0 34.0 40.0 30.0 41.0 25 36.34608732241078 38.0 35.0 40.0 31.0 41.0 26 36.27222558255737 38.0 35.0 40.0 31.0 41.0 27 36.15067090945504 38.0 35.0 40.0 30.0 41.0 28 36.22256230162503 38.0 35.0 40.0 30.0 41.0 29 35.74606587920191 38.0 34.0 40.0 29.0 41.0 30 35.80745414491159 38.0 34.0 40.0 30.0 41.0 31 35.717659696275156 38.0 34.0 40.0 29.0 41.0 32 35.66561945586846 38.0 34.0 40.0 29.0 41.0 33 35.62108433856804 38.0 34.0 40.0 29.0 41.0 34 35.55226579868873 38.0 34.0 40.0 29.0 41.0 35 35.52353189879614 38.0 34.0 40.0 29.0 41.0 36 35.380287217622275 38.0 34.0 40.0 28.0 41.0 37 35.241225985123265 38.0 34.0 40.0 27.0 41.0 38 35.10814862166695 37.0 34.0 40.0 27.0 41.0 39 35.08616528668154 37.0 34.0 40.0 27.0 41.0 40 34.89891752254066 37.0 34.0 40.0 26.0 41.0 41 35.00189752169102 37.0 34.0 40.0 27.0 41.0 42 34.95881892423871 37.0 34.0 40.0 27.0 41.0 43 34.929575242399295 37.0 34.0 40.0 27.0 41.0 44 34.84601955377896 37.0 34.0 40.0 26.0 41.0 45 34.6417365762478 37.0 33.0 40.0 26.0 41.0 46 34.58023300271682 37.0 33.0 40.0 26.0 41.0 47 34.46729202616071 36.0 33.0 40.0 25.0 41.0 48 34.49471505818999 36.0 33.0 40.0 26.0 41.0 49 34.38347335479003 36.0 33.0 40.0 26.0 41.0 50 34.27209611412642 36.0 33.0 39.0 25.0 41.0 51 33.10462667575643 35.0 31.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 2.0 9 4.0 10 3.0 11 16.0 12 14.0 13 11.0 14 39.0 15 67.0 16 114.0 17 224.0 18 426.0 19 799.0 20 1308.0 21 2063.0 22 2749.0 23 3372.0 24 3739.0 25 4169.0 26 4769.0 27 5559.0 28 6719.0 29 8775.0 30 11305.0 31 15357.0 32 21209.0 33 30393.0 34 49401.0 35 52925.0 36 57277.0 37 76669.0 38 86983.0 39 47864.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.849187484448613 35.17616809857403 20.194243105300316 25.780401311677043 2 23.380582567480364 34.548448502920124 19.7091410781079 22.36182785149162 3 19.78601295898076 33.19246898320754 20.841180671172438 26.180337386639263 4 21.326282698364853 33.049446825899345 19.256203864228073 26.368066611507718 5 17.235282574965254 36.083660881720476 18.207711868006935 28.473344675307338 6 19.64946422321976 37.57457078180726 20.71333059561547 22.062634399357513 7 75.65710286064544 10.2933471432993 7.810587685529273 6.238962310525985 8 78.16312617710068 7.835267605177928 6.482929385085641 7.518676832635755 9 72.66354998391759 10.809804806110911 10.884451448326923 5.642193761644573 10 37.18758154993942 32.6375753799595 13.299442274274826 16.875400795826263 11 31.25347693540132 28.164845679699148 22.524472567864724 18.05720481703481 12 30.07996698555011 25.841696521951977 26.410953029257843 17.667383463240068 13 23.93062110456801 34.13293575735998 22.44294791525482 19.49349522281719 14 17.672845412670508 34.420800721786506 27.436181166793776 20.470172698749213 15 15.407350165577984 31.735342251820143 30.009163937377735 22.84814364522413 16 17.247622534789585 28.851432952547796 30.602898069908907 23.298046442753712 17 16.561642145210982 29.422510109663808 26.987694430227645 27.02815331489757 18 21.07523531898796 28.166666329509294 25.690380293286452 25.067718058216286 19 21.591086098529523 32.47149165838945 25.10615399865272 20.831268244428305 20 25.19455666165651 30.144498906598642 23.471210469140996 21.189733962603853 21 20.66498222843491 31.81969902635694 24.90750087492338 22.60781787028477 22 20.203750943197747 29.08144171189633 24.73615749834624 25.97864984655968 23 20.700788341367794 31.270065078115994 22.159128839295285 25.87001774122093 24 17.557739885784567 31.86258544410706 26.982434775220554 23.597239894887817 25 18.33293211606036 29.82730125078642 26.838198851372262 25.00156778178096 26 21.676656639606414 32.59934173394642 23.357521003218505 22.36648062322866 27 17.94088552360877 31.71915869795217 25.781817372640486 24.55813840579857 28 20.177452668162296 29.083464656129827 30.057107715711602 20.68197495999628 29 17.606290547388483 30.78233322342003 28.31130684220428 23.30006938698721 30 20.145490149273055 30.444703830849495 26.485195082627154 22.924610937250293 31 26.305153045845987 29.92662781265109 22.40977162982548 21.358447511677443 32 23.34760857647437 27.972059094246948 23.785373708602975 24.894958620675702 33 22.330269921449077 27.766123371277025 24.00911134082767 25.894495366446236 34 18.9396130916859 29.599922318941434 25.955992871144524 25.504471718228146 35 21.913745703772182 27.337259193775804 27.63099069647947 23.11800440597254 36 23.61119821009894 29.019337323927992 26.957754855571896 20.41170961040117 37 21.64752624264407 31.62205737474435 22.386710065563623 24.343706317047957 38 23.50701658207388 29.55116936291417 24.18955796645554 22.752256088556408 39 22.371335689389053 25.69240323751995 25.75875580837863 26.17750526471237 40 24.17721800663121 26.44089260391359 22.923801759556895 26.45808762989831 41 20.612183383940653 23.990904842726202 28.596137390280564 26.800774383052584 42 26.35613124053009 25.558079740415796 23.84302761925762 24.242761399796493 43 22.78846679033599 25.107772354039515 27.557760115226905 24.546000740397588 44 23.03000633181545 24.94654369862986 24.988014055416535 27.035435914138155 45 25.511552023045382 27.12019727752165 24.541145674237196 22.82710502519577 46 20.62027516087464 25.335353580307853 29.367283732089355 24.67708752672815 47 20.94880130439444 27.435371989100375 25.464417422404917 26.151409284100264 48 23.132569604453714 24.07890291688329 30.914229187443993 21.874298291219006 49 23.356914119948456 23.61888539818623 28.149269009101225 24.87493147276409 50 20.37246449227134 24.803521541321672 26.6537063372774 28.17030762912959 51 20.362552065527208 24.333389301457125 30.078146335739962 25.2259122972757 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5746.0 1 4664.5 2 3583.0 3 2430.0 4 1277.0 5 1462.0 6 1647.0 7 1515.0 8 1383.0 9 1266.5 10 1150.0 11 1198.5 12 1247.0 13 1285.5 14 1324.0 15 1366.0 16 1408.0 17 1545.5 18 1683.0 19 1669.0 20 1655.0 21 1691.5 22 1728.0 23 2099.5 24 2471.0 25 2621.5 26 3389.5 27 4007.0 28 4339.0 29 4671.0 30 5113.0 31 5555.0 32 6340.0 33 7125.0 34 8768.0 35 10411.0 36 10189.5 37 9968.0 38 10883.5 39 11799.0 40 15208.0 41 18617.0 42 23882.5 43 29148.0 44 36867.5 45 44587.0 46 46335.0 47 48083.0 48 51204.5 49 54326.0 50 50794.0 51 47262.0 52 41889.5 53 36517.0 54 32810.5 55 29104.0 56 26357.5 57 23611.0 58 21281.5 59 18952.0 60 17435.5 61 15919.0 62 14397.0 63 12875.0 64 10957.0 65 9039.0 66 8382.0 67 7725.0 68 6379.0 69 5033.0 70 4131.0 71 3229.0 72 3204.0 73 3179.0 74 2674.0 75 1589.0 76 1009.0 77 833.0 78 657.0 79 539.5 80 422.0 81 282.5 82 143.0 83 97.5 84 52.0 85 44.5 86 37.0 87 25.0 88 13.0 89 9.0 90 5.0 91 4.5 92 4.0 93 2.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 494329.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.15739137578351 #Duplication Level Percentage of deduplicated Percentage of total 1 78.56525753507346 24.47888477559508 2 9.475533746645434 5.904658268773522 3 3.411641929225931 3.188935884687763 4 1.5667604663503656 1.9526467616873373 5 0.8738038973205007 1.3612725007249895 6 0.5839076677743711 1.091582383930023 7 0.3904709014659313 0.8516238288480313 8 0.3207288830756899 0.7994460268405744 9 0.26049355653008077 0.7304669722509762 >10 3.342103918519573 25.48760699220449 >50 1.0748585964580348 22.71246241250448 >100 0.12334442910174172 6.02043534449527 >500 0.005220928215946739 0.9914767204728092 >1k 0.004568312188953397 2.288163973642437 >5k 0.0013052320539866848 2.1403371533422453 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGCT 5524 1.1174743945833645 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5002 1.011876705594857 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCC 2242 0.4535440971498739 No Hit AATCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCT 2000 0.40458884669926304 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGT 1987 0.40195901919571786 No Hit AAACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCT 1696 0.3430913420009751 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1256 0.2540817957271372 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1056 0.21362291105721087 No Hit AAAAACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTT 1016 0.20553113412322563 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 836 0.16911813792029196 No Hit CCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC 757 0.15313687847567106 No Hit GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 626 0.12663630901686934 No Hit AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 570 0.11530782130928997 No Hit AAAAAACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCT 548 0.11085734399559807 No Hit AATGACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTT 527 0.10660916110525581 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 508 0.10276556706161281 No Hit AACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTG 504 0.10195638936821429 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.0458884669926305E-4 0.0 0.0 1.3250284729400865 0.0 2 4.0458884669926305E-4 0.0 0.0 1.7221324259754132 0.0 3 4.0458884669926305E-4 0.0 0.0 2.247491043414406 0.0 4 4.0458884669926305E-4 0.0 0.0 4.714269241739813 0.0 5 4.0458884669926305E-4 0.0 0.0 5.100651590337609 0.0 6 4.0458884669926305E-4 0.0 0.0 6.846857052691629 0.0 7 4.0458884669926305E-4 0.0 0.0 8.233787619176702 0.0 8 4.0458884669926305E-4 0.0 0.0 9.045999728925473 0.0 9 4.0458884669926305E-4 0.0 0.0 10.547631233449788 0.0 10 4.0458884669926305E-4 0.0 0.0 12.248320450550139 0.0 11 4.0458884669926305E-4 0.0 0.0 14.530606134780683 0.0 12 4.0458884669926305E-4 0.0 0.0 15.49211152896148 0.0 13 4.0458884669926305E-4 0.0 0.0 15.89953249758764 0.0 14 4.0458884669926305E-4 0.0 0.0 16.358336249744603 0.0 15 4.0458884669926305E-4 0.0 0.0 16.70082070847553 0.0 16 4.0458884669926305E-4 0.0 0.0 17.38012538208359 0.0 17 4.0458884669926305E-4 0.0 0.0 18.17736770450449 0.0 18 4.0458884669926305E-4 0.0 0.0 19.316285307962914 0.0 19 4.0458884669926305E-4 0.0 0.0 19.788035903214254 0.0 20 4.0458884669926305E-4 0.0 0.0 20.222564324569266 0.0 21 4.0458884669926305E-4 0.0 0.0 20.72506367216975 0.0 22 4.0458884669926305E-4 0.0 0.0 21.192768378954096 0.0 23 4.0458884669926305E-4 0.0 0.0 21.72864630640727 0.0 24 4.0458884669926305E-4 0.0 0.0 22.068096348787954 0.0 25 4.0458884669926305E-4 0.0 0.0 22.384687121330128 0.0 26 4.0458884669926305E-4 0.0 0.0 22.667090136326213 0.0 27 4.0458884669926305E-4 0.0 0.0 22.972150126737457 0.0 28 4.0458884669926305E-4 0.0 0.0 23.270332106754815 0.0 29 4.0458884669926305E-4 0.0 0.0 23.58530452391019 0.0 30 4.0458884669926305E-4 0.0 0.0 24.060696418781824 0.0 31 4.0458884669926305E-4 0.0 0.0 24.34229025608451 0.0 32 4.0458884669926305E-4 0.0 0.0 24.635212581094777 0.0 33 4.0458884669926305E-4 0.0 0.0 24.967986907504923 0.0 34 4.0458884669926305E-4 0.0 0.0 25.263741354442082 0.0 35 4.0458884669926305E-4 0.0 0.0 25.607034990866406 0.0 36 4.0458884669926305E-4 0.0 0.0 25.866376441600636 0.0 37 4.0458884669926305E-4 0.0 0.0 26.14331750716628 0.0 38 4.0458884669926305E-4 0.0 0.0 26.41803333407508 0.0 39 6.068832700488946E-4 0.0 0.0 26.712371720048793 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGATACA 35 1.2100463E-7 45.000004 31 GGTACGA 65 0.0 45.000004 9 GTAGCAC 25 3.8875678E-5 45.000004 35 ATATACG 25 3.8875678E-5 45.000004 1 CGTAGCG 25 3.8875678E-5 45.000004 1 CGTAGCA 25 3.8875678E-5 45.000004 34 CACTACG 25 3.8875678E-5 45.000004 1 CATCGCC 25 3.8875678E-5 45.000004 23 GGCATAT 25 3.8875678E-5 45.000004 8 TCATACG 25 3.8875678E-5 45.000004 1 GTAAGCG 25 3.8875678E-5 45.000004 1 CAATACG 50 2.1827873E-11 45.000004 1 GCACTAG 25 3.8875678E-5 45.000004 1 TTCTACG 40 6.8012014E-9 45.0 1 AATCCCG 20 7.029382E-4 45.0 1 CTCACGA 20 7.029382E-4 45.0 24 TGCCAAC 20 7.029382E-4 45.0 12 CGACGGT 20 7.029382E-4 45.0 28 CGACGAT 20 7.029382E-4 45.0 22 CCGATCA 20 7.029382E-4 45.0 17 >>END_MODULE