SRR3552871_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552871_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	561822
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGCT	4353	0.7748005596078473	Illumina Single End Adapter 1 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2747	0.48894489713823946	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCC	2199	0.3914051069555838	No Hit
AATCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCT	1979	0.35224679702824024	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGT	1973	0.3511788431211309	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	930	0.16553285560195222	No Hit
AAACTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCT	906	0.16126103997351474	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	775	0.13794404633496019	No Hit
CCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGC	695	0.12370466090683525	Illumina Single End Adapter 1 (95% over 21bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	667	0.11872087600699154	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTT	590	0.1050154675324213	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGCCG	20	7.030205E-4	45.0	1
CTATACG	25	3.8882514E-5	45.0	1
GCCGGAT	20	7.030205E-4	45.0	20
CGATTGA	20	7.030205E-4	45.0	34
ATGTCGC	20	7.030205E-4	45.0	35
CGTTCGA	20	7.030205E-4	45.0	14
CTAACGG	75	0.0	45.0	2
ACTAGCG	35	1.2104465E-7	45.0	1
ATAACGG	85	0.0	45.0	2
ATACGAG	25	3.8882514E-5	45.0	1
ATTGCGG	35	1.2104465E-7	45.0	2
TATCGGG	25	3.8882514E-5	45.0	3
CGATATG	35	1.2104465E-7	45.0	1
TCAACGT	20	7.030205E-4	45.0	15
ATCGAAT	20	7.030205E-4	45.0	32
TCTATCG	20	7.030205E-4	45.0	37
ACGCATG	30	2.1635133E-6	44.999996	1
TAGCACG	30	2.1635133E-6	44.999996	1
TATTAGG	30	2.1635133E-6	44.999996	2
TAACGGG	240	0.0	43.124996	3