SRR3552867_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552867_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	828273
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGCT	5748	0.6939740882535106	TruSeq Adapter, Index 22 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2650	0.3199428207849344	No Hit
AATCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCT	1704	0.2057292704217088	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCC	1557	0.18798149885363885	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGT	1371	0.16552513482873402	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1308	0.1579189470138469	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1123	0.13558331612886088	No Hit
AAACTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCT	1003	0.1210953393385997	TruSeq Adapter, Index 20 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC	975	0.1177148114208721	TruSeq Adapter, Index 20 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGT	50	2.1827873E-11	45.0	28
CTATCCG	40	6.8102963E-9	45.0	1
CGTCTAG	20	7.032145E-4	45.0	1
ATCCGCG	25	3.8898586E-5	45.0	1
ACGATAG	40	6.8102963E-9	45.0	1
CCGTACC	25	3.8898586E-5	45.0	25
CGTAGCG	45	3.8380676E-10	45.0	1
ACCCGTA	25	3.8898586E-5	45.0	23
ATACGAG	35	1.2113742E-7	45.0	1
GATTCGT	20	7.032145E-4	45.0	9
ATAACGG	85	0.0	42.35294	2
TACGCGG	65	0.0	41.53846	2
TACGAAG	65	0.0	41.53846	1
CCCAACG	55	6.002665E-11	40.909092	1
ACTACGG	165	0.0	40.90909	2
GACCGGA	50	1.0804797E-9	40.5	9
CTACGAA	95	0.0	40.263157	10
ATTGCGG	95	0.0	40.263157	2
ATTACCG	45	1.9272193E-8	40.0	1
CGACTAG	45	1.9272193E-8	40.0	1