SRR3552866_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552866_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	841511
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGCT	5915	0.7029022793522604	TruSeq Adapter, Index 22 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2800	0.33273480679396944	No Hit
AATCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCT	1850	0.21984264020315836	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCC	1638	0.19464986197447212	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGT	1357	0.16125754743550588	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1316	0.15638535919316562	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1063	0.1263203927221391	No Hit
AAACTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCT	1058	0.1257262234242927	TruSeq Adapter, Index 20 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC	977	0.11610068079918147	TruSeq Adapter, Index 20 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGTA	20	7.032209E-4	45.0	26
TAACGCG	35	1.2114106E-7	45.0	1
CATAGCG	50	2.1827873E-11	45.0	1
CCGAACG	35	1.2114106E-7	45.0	1
TAGTGCG	35	1.2114106E-7	45.0	1
ATGTTCG	20	7.032209E-4	45.0	15
TATCGTG	25	3.889912E-5	45.0	1
CGATACG	25	3.889912E-5	45.0	1
GCCCGTA	20	7.032209E-4	45.0	11
GCGTAAG	25	3.889912E-5	45.0	1
TCGCGCG	25	3.889912E-5	45.0	1
ATAACGG	75	0.0	42.0	2
CTATCCG	65	0.0	41.53846	1
AGTACGG	115	0.0	41.086956	2
CTAGACG	55	6.002665E-11	40.909092	1
TACTACG	55	6.002665E-11	40.909092	1
CGACGGT	50	1.0804797E-9	40.5	28
CACTGCG	45	1.9272193E-8	40.0	1
TAGCGGG	440	0.0	39.375	3
TAGCGCG	80	0.0	39.375	1