SRR3552862_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552862_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	360040
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGCT	2859	0.7940784357293633	Illumina Single End Adapter 1 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2436	0.6765914898344628	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCC	1766	0.49050105543828465	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGT	1578	0.43828463504055104	No Hit
AATCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCT	1498	0.41606488167981337	No Hit
AAACTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCT	746	0.20719920008887902	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	634	0.17609154538384622	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTT	562	0.1560937673591823	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	519	0.14415064992778578	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	463	0.12859682257526941	No Hit
CCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	384	0.10665481613154094	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	376	0.10443284079546718	No Hit
AATGACTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTT	366	0.10165537162537495	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGT	35	1.2088276E-7	45.000004	27
CTATCGG	35	1.2088276E-7	45.000004	2
ATTACGC	30	2.1613323E-6	45.000004	18
ACGGGTC	35	1.2088276E-7	45.000004	5
AAGCACG	30	2.1613323E-6	45.000004	1
TAACACG	30	2.1613323E-6	45.000004	1
TACTACG	30	2.1613323E-6	45.000004	1
TATACGG	30	2.1613323E-6	45.000004	2
AGTACGG	35	1.2088276E-7	45.000004	2
CTAGAAT	20	7.026826E-4	45.0	27
AGCGTCC	20	7.026826E-4	45.0	42
CGGAAAC	20	7.026826E-4	45.0	6
TCGTTAA	25	3.8854505E-5	45.0	29
CGAACAG	20	7.026826E-4	45.0	1
ACACGAA	20	7.026826E-4	45.0	19
CTCGTAG	20	7.026826E-4	45.0	1
CTCCGAT	20	7.026826E-4	45.0	34
TTTACGG	20	7.026826E-4	45.0	2
CGACGGT	25	3.8854505E-5	45.0	28
CGGCATG	25	3.8854505E-5	45.0	1