SRR3552857_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552857_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	529754
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGCT	5128	0.9679964662843509	Illumina Single End Adapter 1 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3243	0.6121709321685159	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCC	2090	0.3945227407438169	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGT	2046	0.38621699883342075	No Hit
AATCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCT	1938	0.36583017778063026	No Hit
AAACTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCT	1722	0.32505653567504916	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTT	1361	0.2569116986374808	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	811	0.15308992475752897	No Hit
CCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	769	0.14516171657033264	Illumina Single End Adapter 1 (95% over 21bp)
AAAAAACTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCT	675	0.12741763157994088	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	602	0.11363765068314728	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	596	0.1125050495135478	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCCGAC	35	1.2102646E-7	45.000004	31
CGACACG	45	3.8380676E-10	45.000004	1
ACTACCG	45	3.8380676E-10	45.000004	1
ACGTATG	35	1.2102646E-7	45.000004	1
TCGCCTC	25	3.8879483E-5	45.0	24
AGCCGGC	20	7.029841E-4	45.0	18
GCGACAA	25	3.8879483E-5	45.0	9
ATAGGCG	25	3.8879483E-5	45.0	1
CGACGGT	25	3.8879483E-5	45.0	28
TAGCGCA	20	7.029841E-4	45.0	20
TTCACTC	20	7.029841E-4	45.0	19
TCCTCGC	25	3.8879483E-5	45.0	21
TGCGGCG	20	7.029841E-4	45.0	21
TCTAGCG	40	6.8030204E-9	45.0	1
ATGTACG	25	3.8879483E-5	45.0	1
TAACCCG	20	7.029841E-4	45.0	1
TCTAACG	25	3.8879483E-5	45.0	1
CTTGACG	20	7.029841E-4	45.0	1
TATTACG	40	6.8030204E-9	45.0	1
CGGCTAA	20	7.029841E-4	45.0	5