SRR3552852_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552852_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	327691
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4074	1.2432443979236536	No Hit
CTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGCT	3601	1.098901098901099	No Hit
AAACTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCT	1477	0.4507294982163074	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTT	1004	0.30638619919375265	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	964	0.2941795777119298	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCC	776	0.23680845674736262	No Hit
AATCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCT	769	0.23467229798804362	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGT	761	0.23223097369167905	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	698	0.2130055448578081	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	599	0.18279415669029664	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	587	0.1791321702457498	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCT	552	0.16845137644915487	No Hit
CCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	551	0.16814621091210927	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	525	0.16021190694892443	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	391	0.119319724984818	No Hit
GAAAAACTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCT	370	0.11291124870686103	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTA	20	7.025896E-4	45.000004	38
TAATACG	20	7.025896E-4	45.000004	1
GACAGCG	20	7.025896E-4	45.000004	1
ATTAACG	20	7.025896E-4	45.000004	1
TAGCCGT	40	6.7902874E-9	45.000004	44
AGAACCG	20	7.025896E-4	45.000004	1
CCGTAGT	40	6.7902874E-9	45.000004	27
CGTAGTG	40	6.7902874E-9	45.000004	28
AAGTTCG	20	7.025896E-4	45.000004	1
GCGGGTT	20	7.025896E-4	45.000004	5
ATGGTCG	20	7.025896E-4	45.000004	44
CATAAGA	20	7.025896E-4	45.000004	14
ATTTGCG	40	6.7902874E-9	45.000004	12
AGTACGG	40	6.7902874E-9	45.000004	2
TAGTCAT	20	7.025896E-4	45.000004	15
GTAGTGC	40	6.7902874E-9	45.000004	29
TGCGTAG	20	7.025896E-4	45.000004	1
CGAACAG	25	3.884681E-5	45.0	1
TGCCACG	25	3.884681E-5	45.0	1
GACCGAA	25	3.884681E-5	45.0	9