##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552852_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 327691 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.28006567162357 31.0 31.0 34.0 30.0 34.0 2 31.535876786362763 31.0 31.0 34.0 30.0 34.0 3 31.74110061002591 31.0 31.0 34.0 30.0 34.0 4 35.62623630188195 37.0 35.0 37.0 35.0 37.0 5 34.98200133662505 37.0 35.0 37.0 32.0 37.0 6 35.06501856932293 36.0 35.0 37.0 32.0 37.0 7 35.05885422547461 37.0 35.0 37.0 32.0 37.0 8 35.453253217207674 37.0 35.0 37.0 33.0 37.0 9 37.03121233112902 39.0 37.0 39.0 34.0 39.0 10 36.46019268152009 38.0 35.0 39.0 32.0 39.0 11 36.580427903116046 38.0 35.0 39.0 32.0 39.0 12 36.24635708640152 38.0 35.0 39.0 32.0 39.0 13 36.02012261551278 38.0 35.0 39.0 31.0 39.0 14 37.051191518839396 39.0 36.0 40.0 32.0 41.0 15 36.99466265475707 39.0 35.0 40.0 32.0 41.0 16 36.898627060248835 38.0 35.0 40.0 32.0 41.0 17 36.81842345380252 38.0 35.0 40.0 32.0 41.0 18 36.70366290194116 38.0 35.0 40.0 31.0 41.0 19 36.793631805572936 38.0 35.0 40.0 31.0 41.0 20 36.645034498963966 38.0 35.0 40.0 31.0 41.0 21 36.7296569023867 38.0 35.0 40.0 31.0 41.0 22 36.730831789704325 39.0 35.0 40.0 31.0 41.0 23 36.61232075339268 38.0 35.0 40.0 31.0 41.0 24 36.20675880631448 38.0 35.0 40.0 30.0 41.0 25 36.39939149991913 38.0 35.0 40.0 31.0 41.0 26 36.25569515183511 38.0 35.0 40.0 30.0 41.0 27 36.144099166592916 38.0 35.0 40.0 30.0 41.0 28 36.15716025157847 38.0 35.0 40.0 30.0 41.0 29 35.719443011861784 38.0 34.0 40.0 29.0 41.0 30 35.90022307600758 38.0 34.0 40.0 30.0 41.0 31 35.788898688093354 38.0 34.0 40.0 29.0 41.0 32 35.7212282302535 38.0 34.0 40.0 29.0 41.0 33 35.70484389256952 38.0 34.0 40.0 29.0 41.0 34 35.60172845760182 38.0 34.0 40.0 28.0 41.0 35 35.48153901083643 38.0 34.0 40.0 28.0 41.0 36 35.46756548089511 38.0 34.0 40.0 28.0 41.0 37 35.337748061435924 38.0 34.0 40.0 27.0 41.0 38 35.30303853325236 38.0 34.0 40.0 27.0 41.0 39 35.327570790775454 38.0 34.0 40.0 27.0 41.0 40 35.11370467910318 38.0 34.0 40.0 27.0 41.0 41 35.165826952830564 38.0 34.0 40.0 27.0 41.0 42 35.0772618106692 37.0 34.0 40.0 27.0 41.0 43 35.05499693308635 37.0 34.0 40.0 27.0 41.0 44 34.94172864070115 37.0 34.0 40.0 26.0 41.0 45 34.7650438980625 37.0 34.0 40.0 26.0 41.0 46 34.70073331278552 37.0 33.0 40.0 25.0 41.0 47 34.55951185720694 37.0 33.0 40.0 25.0 41.0 48 34.55998181213399 37.0 33.0 40.0 25.0 41.0 49 34.44057053748806 36.0 33.0 40.0 25.0 41.0 50 34.35833758022039 36.0 33.0 40.0 24.0 41.0 51 33.14634823660094 35.0 31.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 3.0 11 11.0 12 10.0 13 11.0 14 20.0 15 43.0 16 76.0 17 150.0 18 270.0 19 594.0 20 942.0 21 1422.0 22 1889.0 23 2245.0 24 2636.0 25 2859.0 26 3248.0 27 3658.0 28 4356.0 29 5603.0 30 7267.0 31 9763.0 32 13153.0 33 18882.0 34 30163.0 35 32792.0 36 37386.0 37 51255.0 38 61405.0 39 35574.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.346912182513403 33.03630554394231 20.15099590773015 26.465786365814136 2 22.97347195986463 34.81145347293639 18.858314692805113 23.356759874393866 3 21.193136216740772 34.22248398643845 19.486650533581944 25.097729263238843 4 20.82663240674904 33.917928780466966 18.973972431345384 26.281466381438612 5 17.706314790458084 36.662282455117776 18.336786789994232 27.2946159644299 6 19.79669871922024 38.17346219456744 19.982544531280993 22.047294554931323 7 75.89436389769631 10.361895810382341 7.798810464736597 5.944929827184756 8 78.17669694926013 8.558672651980066 6.8430320027098706 6.421598396049938 9 72.38434989059816 11.493144456210272 10.91516092904596 5.207344724145613 10 36.63054523926504 32.03810907226625 13.799585585200692 17.531760103268017 11 29.292839901004296 29.146970774296516 23.289928621780884 18.270260702918296 12 29.562911401289632 26.664143964893753 26.113625336063546 17.659319297753065 13 25.08308131746066 31.247120000244134 23.190139491166985 20.479659191128228 14 18.609299614575928 33.902060172540594 27.971167960059933 19.517472252823545 15 17.16434079666515 32.20198296565972 29.01330826907056 21.62036796860457 16 18.63249219539139 29.99685679496843 28.825326298250488 22.545324711389693 17 18.356927715439237 30.008453085376164 27.441400587748827 24.193218611435775 18 21.17818310542554 28.725842333173627 25.613153855308813 24.48282070609202 19 21.333512363781733 33.32834896289492 25.097424097701797 20.240714575621546 20 24.620755528836618 31.124443454351812 24.35953382912561 19.89526718768596 21 21.854124769981475 31.673436255496796 25.34949083130144 21.12294814322029 22 20.389635357699785 29.64286477199557 25.698600205681572 24.268899664623074 23 21.703372994680965 31.363388069858495 23.060138972385573 23.87309996307497 24 18.765544369543257 31.13024159955568 27.115178628647108 22.98903540225395 25 20.98989596906842 30.10732671937893 26.09897739028536 22.80379992126729 26 21.690861207662095 33.68630813784937 22.566381133445837 22.05644952104269 27 17.68373254071671 31.476909649639445 26.063578187988075 24.775779621655765 28 20.418015752645022 29.78446158118471 28.99866032329237 20.798862342877893 29 19.769538986423186 32.92278396416136 25.10902038810953 22.198656661305925 30 20.306325166086346 28.82776762254685 29.47014107802778 21.39576613333903 31 24.84322120534284 30.68714123976551 21.804077621906004 22.665559932985648 32 21.86083841179648 29.712747679979007 24.51364242533362 23.912771482890893 33 22.309736916790513 27.770063871146906 27.41363052387768 22.506568688184906 34 19.046906994699274 29.160703223463567 25.506651082879912 26.28573869895725 35 18.90805667534354 29.42436624747094 29.292229569930207 22.37534750725531 36 22.797391444989334 28.963566286532128 28.528705396242195 19.710336872236343 37 20.257498680159053 31.717380092831355 24.13004934526734 23.89507188174225 38 22.06865614252451 29.376150092617742 26.227757246918593 22.327436517939155 39 21.05123424201458 25.60857637225313 27.721542550756656 25.618646834975635 40 22.674714899097015 27.14447452020348 25.34247202394939 24.83833855675011 41 19.544326820083555 24.61373672148457 30.076810165674374 25.765126292757508 42 23.418708478414114 27.892740417039224 25.230781437390714 23.457769667155947 43 21.29292534735467 26.34280465438477 27.52654177258454 24.837728225676017 44 21.887387813519442 24.786460415452364 26.344635647607046 26.98151612342115 45 24.35190469069947 26.316560418198854 26.199376851973355 23.132158039128324 46 20.24620755528837 26.173437781324477 29.873875083539065 23.70647957984809 47 20.54435428498189 27.388912115376986 26.50423722348188 25.56249637615925 48 21.28621170553967 24.57192904290933 31.419538528674877 22.722320722876123 49 22.276473873252545 23.868522480019287 29.39476519037752 24.46023845635065 50 19.946534997909616 24.737328763988025 27.391048274136303 27.925087963966057 51 19.680735815142924 24.047349484727988 32.05123119035921 24.220683509769874 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4635.0 1 3600.0 2 2565.0 3 1745.5 4 926.0 5 1163.5 6 1401.0 7 1229.5 8 1058.0 9 1037.0 10 1016.0 11 972.0 12 928.0 13 910.0 14 892.0 15 946.0 16 1000.0 17 1068.5 18 1137.0 19 1294.0 20 1451.0 21 1323.5 22 1196.0 23 1592.5 24 1989.0 25 2070.0 26 2406.5 27 2662.0 28 3225.5 29 3789.0 30 4079.0 31 4369.0 32 5017.0 33 5665.0 34 6174.5 35 6684.0 36 7854.0 37 9024.0 38 9291.5 39 9559.0 40 12461.5 41 15364.0 42 19426.0 43 23488.0 44 25922.5 45 28357.0 46 31842.0 47 35327.0 48 32512.5 49 29698.0 50 27407.5 51 25117.0 52 22854.0 53 20591.0 54 18633.5 55 16676.0 56 15146.0 57 13616.0 58 12877.5 59 12139.0 60 11525.5 61 10912.0 62 9659.0 63 8406.0 64 7795.5 65 7185.0 66 5934.0 67 4683.0 68 4191.5 69 3700.0 70 3060.5 71 2421.0 72 2158.5 73 1896.0 74 1699.0 75 1288.0 76 1074.0 77 869.5 78 665.0 79 530.5 80 396.0 81 277.0 82 158.0 83 122.5 84 87.0 85 67.5 86 48.0 87 34.0 88 20.0 89 39.0 90 58.0 91 32.0 92 6.0 93 4.0 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 327691.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.88016468584915 #Duplication Level Percentage of deduplicated Percentage of total 1 75.45267943568352 24.05443846398174 2 10.07657543289643 6.424857685402398 3 3.4328871068049023 3.283230189386055 4 1.5551913470565273 1.9831902504867869 5 0.9728678894358794 1.550759426639516 6 0.7463224612803265 1.4275729784619051 7 0.6016427412695694 1.3426328771603724 8 0.4669460499384537 1.1909053577155715 9 0.42803380497612575 1.2281209374374573 >10 5.902675795453067 43.17062855502935 >50 0.30032207807334727 6.020686976796033 >100 0.049887388384276955 2.9352757513669587 >500 0.009977477676855391 2.157243188748452 >1k 0.003990991070742156 3.2304573613873893 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4074 1.2432443979236536 No Hit CTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGCT 3601 1.098901098901099 No Hit AAACTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCT 1477 0.4507294982163074 No Hit AAAAACTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTT 1004 0.30638619919375265 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 964 0.2941795777119298 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCC 776 0.23680845674736262 No Hit AATCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCT 769 0.23467229798804362 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGT 761 0.23223097369167905 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 698 0.2130055448578081 No Hit GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 599 0.18279415669029664 No Hit AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 587 0.1791321702457498 No Hit AAAAAACTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCT 552 0.16845137644915487 No Hit CCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC 551 0.16814621091210927 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 525 0.16021190694892443 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 391 0.119319724984818 No Hit GAAAAACTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCT 370 0.11291124870686103 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.2972586979807197 0.0 2 0.0 0.0 0.0 1.7238801187704271 0.0 3 0.0 0.0 0.0 2.191393721524241 0.0 4 0.0 0.0 0.0 4.485323063495794 0.0 5 0.0 0.0 0.0 4.870747136784349 0.0 6 3.051655370455704E-4 0.0 0.0 6.662374004778893 0.0 7 3.051655370455704E-4 0.0 0.0 8.10031401533762 0.0 8 3.051655370455704E-4 0.0 0.0 8.731091180410814 0.0 9 3.051655370455704E-4 0.0 0.0 9.974945909408559 0.0 10 3.051655370455704E-4 0.0 0.0 11.403120622781827 0.0 11 3.051655370455704E-4 0.0 0.0 13.27897317900095 0.0 12 3.051655370455704E-4 0.0 0.0 14.208812570378802 0.0 13 3.051655370455704E-4 0.0 0.0 14.558837441370072 0.0 14 3.051655370455704E-4 0.0 0.0 14.983322703400459 0.0 15 3.051655370455704E-4 0.0 0.0 15.317784132002405 0.0 16 3.051655370455704E-4 0.0 0.0 16.00227043159562 0.0 17 3.051655370455704E-4 0.0 0.0 16.82469155393343 0.0 18 3.051655370455704E-4 0.0 0.0 17.815869218257443 0.0 19 3.051655370455704E-4 0.0 0.0 18.263547061103296 0.0 20 3.051655370455704E-4 0.0 0.0 18.74265695426484 0.0 21 3.051655370455704E-4 0.0 0.0 19.2586918774089 0.0 22 3.051655370455704E-4 0.0 0.0 19.82782560399889 0.0 23 3.051655370455704E-4 0.0 0.0 20.390245688773874 0.0 24 3.051655370455704E-4 0.0 0.0 20.773228437766065 0.0 25 3.051655370455704E-4 0.0 0.0 21.089685099682324 0.0 26 3.051655370455704E-4 0.0 0.0 21.392104146894482 0.0 27 3.051655370455704E-4 0.0 0.0 21.734499879459612 0.0 28 3.051655370455704E-4 0.0 0.0 22.071097466820877 0.0 29 3.051655370455704E-4 0.0 0.0 22.44767173953511 0.0 30 3.051655370455704E-4 0.0 0.0 22.85079541397231 0.0 31 3.051655370455704E-4 0.0 0.0 23.20478743694517 0.0 32 3.051655370455704E-4 0.0 0.0 23.5130046293612 0.0 33 3.051655370455704E-4 0.0 0.0 23.849907382259506 0.0 34 3.051655370455704E-4 0.0 0.0 24.18436881086145 0.0 35 3.051655370455704E-4 0.0 0.0 24.575591029353873 0.0 36 3.051655370455704E-4 0.0 0.0 24.89479418110354 0.0 37 6.103310740911408E-4 0.0 0.0 25.21308183624207 0.0 38 6.103310740911408E-4 0.0 0.0 25.55395174112197 0.0 39 6.103310740911408E-4 0.0 0.0 25.916793564669156 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTTA 20 7.025896E-4 45.000004 38 TAATACG 20 7.025896E-4 45.000004 1 GACAGCG 20 7.025896E-4 45.000004 1 ATTAACG 20 7.025896E-4 45.000004 1 TAGCCGT 40 6.7902874E-9 45.000004 44 AGAACCG 20 7.025896E-4 45.000004 1 CCGTAGT 40 6.7902874E-9 45.000004 27 CGTAGTG 40 6.7902874E-9 45.000004 28 AAGTTCG 20 7.025896E-4 45.000004 1 GCGGGTT 20 7.025896E-4 45.000004 5 ATGGTCG 20 7.025896E-4 45.000004 44 CATAAGA 20 7.025896E-4 45.000004 14 ATTTGCG 40 6.7902874E-9 45.000004 12 AGTACGG 40 6.7902874E-9 45.000004 2 TAGTCAT 20 7.025896E-4 45.000004 15 GTAGTGC 40 6.7902874E-9 45.000004 29 TGCGTAG 20 7.025896E-4 45.000004 1 CGAACAG 25 3.884681E-5 45.0 1 TGCCACG 25 3.884681E-5 45.0 1 GACCGAA 25 3.884681E-5 45.0 9 >>END_MODULE