SRR3552851_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552851_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	783418
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT	4984	0.6361865568572589	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3573	0.45607836429594417	No Hit
AAACTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCT	1515	0.19338335345881766	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1205	0.15381316232202988	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1188	0.15164318409839958	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTT	1112	0.14194210498099355	No Hit
CCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	809	0.10326543428923	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	798	0.10186133073276334	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCG	25	3.8896636E-5	45.000004	1
ACACGAT	25	3.8896636E-5	45.000004	28
TAGCCGT	110	0.0	45.000004	44
TAGCACG	30	2.164612E-6	45.000004	1
TCGGACG	25	3.8896636E-5	45.000004	1
CGTAGTG	25	3.8896636E-5	45.000004	28
GCTAACG	50	2.1827873E-11	45.000004	1
CAACGTT	20	7.03191E-4	45.0	31
CGCATCG	35	1.211265E-7	45.0	21
CGCTAAA	20	7.03191E-4	45.0	35
GAACGAT	20	7.03191E-4	45.0	43
GCGATAG	40	6.8102963E-9	45.0	1
TATAGCG	35	1.211265E-7	45.0	1
TAGGCCG	20	7.03191E-4	45.0	1
TTACCGG	70	0.0	45.0	2
TCGACGC	20	7.03191E-4	45.0	19
CGCCCGA	20	7.03191E-4	45.0	20
CTTACCG	35	1.211265E-7	45.0	1
GCGACCG	85	0.0	42.35294	32
CTAACGG	85	0.0	42.35294	2