##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552851_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 783418 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.297035554454965 31.0 31.0 34.0 30.0 34.0 2 31.578900408211197 31.0 31.0 34.0 30.0 34.0 3 31.728574017957207 31.0 31.0 34.0 30.0 34.0 4 35.64851969191415 37.0 35.0 37.0 35.0 37.0 5 35.105841326086455 37.0 35.0 37.0 33.0 37.0 6 35.2080741060328 37.0 35.0 37.0 33.0 37.0 7 35.308255618328914 37.0 35.0 37.0 33.0 37.0 8 35.702430886193575 37.0 35.0 37.0 35.0 37.0 9 37.22049531667641 39.0 37.0 39.0 34.0 39.0 10 36.5380358888869 38.0 35.0 39.0 32.0 39.0 11 36.72162753472603 39.0 35.0 39.0 32.0 39.0 12 36.54200311966281 39.0 35.0 39.0 32.0 39.0 13 36.307700359195216 39.0 35.0 39.0 32.0 39.0 14 37.43010627787465 39.0 36.0 40.0 32.0 41.0 15 37.348677206804034 39.0 36.0 40.0 32.0 41.0 16 37.257368352527 39.0 36.0 40.0 32.0 41.0 17 37.179971611579006 39.0 36.0 40.0 32.0 41.0 18 37.11535476591041 39.0 36.0 40.0 32.0 41.0 19 37.30046284359052 39.0 36.0 40.0 32.0 41.0 20 37.1211128669497 39.0 35.0 40.0 32.0 41.0 21 37.25350962066228 39.0 35.0 40.0 32.0 41.0 22 37.26448460464273 39.0 35.0 40.0 32.0 41.0 23 37.21118611009704 39.0 35.0 40.0 32.0 41.0 24 36.77720322994876 39.0 35.0 40.0 31.0 41.0 25 37.01291264688838 39.0 35.0 40.0 32.0 41.0 26 36.9679481451792 39.0 35.0 40.0 32.0 41.0 27 36.874414424994065 39.0 35.0 40.0 31.0 41.0 28 36.92715638394829 39.0 35.0 40.0 31.0 41.0 29 36.508849681779076 39.0 35.0 40.0 30.0 41.0 30 36.56048495183925 39.0 35.0 40.0 31.0 41.0 31 36.52777189188913 39.0 35.0 40.0 31.0 41.0 32 36.4827512260377 39.0 35.0 40.0 30.0 41.0 33 36.45466021970391 39.0 35.0 40.0 30.0 41.0 34 36.39640268668833 38.0 35.0 40.0 30.0 41.0 35 36.28998057231261 38.0 35.0 40.0 30.0 41.0 36 36.30246815876071 38.0 35.0 40.0 30.0 41.0 37 36.205647559795665 38.0 35.0 40.0 30.0 41.0 38 36.08919121082232 38.0 35.0 40.0 30.0 41.0 39 36.064532599455205 38.0 35.0 40.0 30.0 41.0 40 35.93229412650718 38.0 35.0 40.0 30.0 41.0 41 35.99334327268457 38.0 35.0 40.0 30.0 41.0 42 35.92123744922889 38.0 35.0 40.0 30.0 41.0 43 35.906466279814865 38.0 35.0 40.0 30.0 41.0 44 35.82292339466287 38.0 35.0 40.0 30.0 41.0 45 35.65079306321785 38.0 34.0 40.0 29.0 41.0 46 35.62431294660067 38.0 34.0 40.0 29.0 41.0 47 35.50460801258077 38.0 34.0 40.0 29.0 41.0 48 35.4820887444506 38.0 34.0 40.0 29.0 41.0 49 35.37771534480954 37.0 34.0 40.0 28.0 41.0 50 35.27366105961313 37.0 34.0 40.0 28.0 41.0 51 34.07267512362493 36.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 6.0 10 14.0 11 17.0 12 24.0 13 28.0 14 67.0 15 83.0 16 176.0 17 239.0 18 483.0 19 867.0 20 1355.0 21 1958.0 22 2782.0 23 3500.0 24 4128.0 25 4872.0 26 5779.0 27 6650.0 28 8421.0 29 11034.0 30 14166.0 31 19423.0 32 27325.0 33 38902.0 34 63591.0 35 70702.0 36 87880.0 37 128936.0 38 169308.0 39 110696.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.162115243714084 32.106870151056015 19.21949712669354 26.511517478536362 2 26.46096975050356 29.985780260346328 19.511040083327163 24.042209905822943 3 21.7314383892124 31.453196122631848 20.158459468636156 26.656906019519592 4 20.5759888080182 32.07074639592146 20.07702146236109 27.276243333699252 5 19.103084177284668 33.39634779900385 18.34882527590635 29.15174274780513 6 20.16114002997123 36.93826284307994 20.25202382380798 22.64857330314085 7 83.38588084521929 5.837624358899081 5.978290006101468 4.7982047897801685 8 85.11765111345412 4.998991598354901 5.240369764289307 4.642987523901672 9 78.88330367696427 8.26748938625357 8.359394346313206 4.489812590468945 10 36.113798763878286 34.643319402924114 13.427952893602138 15.814928939595466 11 28.484793558483467 28.130704170698145 25.25254717149721 18.13195509932118 12 29.062135411746986 24.82697614810995 27.578636181451028 18.53225225869204 13 25.886053167019398 28.048755581311635 26.0859464551491 19.979244796519865 14 20.389370680785994 29.90561871184987 28.891217715191637 20.813792892172504 15 18.40345766883069 30.385566836605744 30.40675603573061 20.80421945883296 16 22.36341263540026 28.02233290529449 28.607078213673926 21.007176245631324 17 20.908888996678655 27.254288259907227 28.26651927834183 23.570303465072286 18 22.655210883589604 27.70372904375442 26.855905787204275 22.7851542854517 19 24.59083145906783 30.4560273059848 25.549195959245257 19.403945275702117 20 25.453972208961247 29.545019389393655 25.264801166171825 19.736207235473273 21 23.936391555976503 28.9172574538752 26.958277701048484 20.18807328909982 22 23.159411706138997 26.486371260297826 26.532451386105503 23.821765647457678 23 22.196196666402866 29.172804301152134 25.658460745093937 22.972538287351068 24 20.282275873160945 29.33019154525426 28.419821857552417 21.96771072403238 25 21.687272950072632 28.507514506942655 26.82450492585057 22.980707617134147 26 23.001258587369705 30.46713248865867 24.683629939572487 21.847978984399134 27 20.61275079204205 29.193099979831967 26.340472136203154 23.853677091922833 28 21.665956105169908 29.145998687801406 28.895047088527452 20.292998118501234 29 21.389475350323835 28.307621218812944 28.63554322213684 21.66736020872638 30 23.548858974391703 27.884986048316478 27.580295576563213 20.9858594007286 31 25.034783474467016 27.5855290534555 25.447079336956772 21.932608135120716 32 24.256782458406622 27.475115455606076 26.948448976153216 21.319653109834086 33 23.98004641200483 27.05337380555463 26.438631739377954 22.52794804306258 34 20.46634108483594 27.638246759711926 28.481347122481232 23.414065032970903 35 21.541884409089402 27.928257967011227 29.314618760355266 21.215238863544112 36 23.844103658583286 27.661733582838284 27.383848724435744 21.110314034142693 37 22.83544672192878 30.09210919330421 25.15987633677041 21.9125677479966 38 23.01440610248935 28.712896563520367 26.871989155214713 21.40070817877557 39 22.072380261878077 26.08313824803617 26.8820731716657 24.962408318420053 40 22.825873288589232 27.343129721298208 26.190233055661217 23.64076393445134 41 21.214345343099087 25.013466629564295 28.883176031186412 24.889011996150202 42 23.624425274885184 27.045076829993693 26.406720294912805 22.923777600208318 43 22.46476338302158 26.13189893517892 27.422270103571783 23.981067578227716 44 22.857912378832246 25.372534202686175 27.176551981190116 24.59300143729146 45 23.848571260808406 26.415272562029468 27.357043111085016 22.379113066077114 46 21.32973712628507 25.947706077726068 29.920170330525973 22.80238646546288 47 21.833172074167305 27.37925347643276 26.80178397739138 23.98579047200856 48 21.93350165556574 25.45971626896497 30.407394264619906 22.19938781084938 49 22.605046092890387 24.952451947746923 29.305938847460745 23.136563111901946 50 21.4155150890074 25.50222231299255 27.662882394839027 25.41938020316102 51 21.124227423929497 25.49903116854604 30.111383705761163 23.265357701763296 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4205.0 1 3343.0 2 2481.0 3 1792.5 4 1104.0 5 1738.0 6 2372.0 7 2040.5 8 1709.0 9 1554.0 10 1399.0 11 1362.5 12 1326.0 13 1283.0 14 1240.0 15 1415.5 16 1591.0 17 1643.5 18 1696.0 19 1714.5 20 1733.0 21 1998.5 22 2264.0 23 2780.5 24 3297.0 25 4035.5 26 6072.0 27 7370.0 28 8753.5 29 10137.0 30 11425.0 31 12713.0 32 14255.0 33 15797.0 34 17790.0 35 19783.0 36 23482.5 37 27182.0 38 28510.5 39 29839.0 40 34969.0 41 40099.0 42 45565.0 43 51031.0 44 57762.5 45 64494.0 46 70144.5 47 75795.0 48 72847.0 49 69899.0 50 64823.5 51 59748.0 52 55643.5 53 51539.0 54 46896.0 55 42253.0 56 39113.5 57 35974.0 58 32907.0 59 29840.0 60 28829.0 61 27818.0 62 24946.0 63 22074.0 64 19341.5 65 16609.0 66 14555.5 67 12502.0 68 10401.5 69 8301.0 70 7908.5 71 7516.0 72 6248.5 73 4981.0 74 4396.0 75 2996.0 76 2181.0 77 1713.0 78 1245.0 79 1028.5 80 812.0 81 592.5 82 373.0 83 328.5 84 284.0 85 208.5 86 133.0 87 96.5 88 60.0 89 36.0 90 12.0 91 12.5 92 13.0 93 8.5 94 4.0 95 3.5 96 3.0 97 2.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 783418.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.418346915657153 #Duplication Level Percentage of deduplicated Percentage of total 1 76.52817435166361 20.982760331958087 2 9.60089441775905 5.264813076934277 3 3.3486627441788257 2.754443904702945 4 1.580005108950745 1.7328451282288877 5 0.9197694188794795 1.2609278504624977 6 0.6012758409732568 0.9891593759884955 7 0.46355618746435573 0.8896961053957974 8 0.38559339639856166 0.8457866808673815 9 0.34729376384267713 0.8569998808814547 >10 4.749257566616069 32.84830342003847 >50 1.3676097448469549 24.71445487426379 >100 0.10087001548557872 4.341231395505845 >500 0.004222465764512597 0.7720774812085479 >1k 0.0028149771763417318 1.7465004935635546 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT 4984 0.6361865568572589 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3573 0.45607836429594417 No Hit AAACTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCT 1515 0.19338335345881766 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 1205 0.15381316232202988 No Hit GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1188 0.15164318409839958 No Hit AAAAACTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTT 1112 0.14194210498099355 No Hit CCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 809 0.10326543428923 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 798 0.10186133073276334 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.276457778606057E-4 0.0 0.0 0.7363884924778343 0.0 2 1.276457778606057E-4 0.0 0.0 0.9927012144219306 0.0 3 1.276457778606057E-4 0.0 0.0 1.286797086612766 0.0 4 1.276457778606057E-4 0.0 0.0 2.6328218141528534 0.0 5 1.276457778606057E-4 0.0 0.0 2.875731729421586 0.0 6 1.276457778606057E-4 0.0 0.0 3.982803560806619 0.0 7 1.276457778606057E-4 0.0 0.0 4.798332435558029 0.0 8 1.276457778606057E-4 0.0 0.0 5.187524412255016 0.0 9 1.276457778606057E-4 0.0 0.0 5.919955885619172 0.0 10 1.276457778606057E-4 0.0 0.0 6.894403753807035 0.0 11 1.276457778606057E-4 0.0 0.0 8.100018125700457 0.0 12 1.276457778606057E-4 0.0 0.0 8.665105984289358 0.0 13 1.276457778606057E-4 0.0 0.0 8.896527779550636 0.0 14 1.276457778606057E-4 0.0 0.0 9.164328621502186 0.0 15 1.276457778606057E-4 0.0 0.0 9.401494476767192 0.0 16 1.276457778606057E-4 0.0 0.0 9.874932666852178 0.0 17 1.276457778606057E-4 0.0 0.0 10.478697196132844 0.0 18 1.276457778606057E-4 0.0 0.0 11.135307077447798 0.0 19 1.276457778606057E-4 0.0 0.0 11.469100786553284 0.0 20 1.276457778606057E-4 0.0 0.0 11.841826457906253 0.0 21 1.276457778606057E-4 0.0 0.0 12.268673939072118 0.0 22 1.276457778606057E-4 0.0 0.0 12.734708674041189 0.0 23 1.276457778606057E-4 0.0 0.0 13.189382934780665 0.0 24 1.276457778606057E-4 0.0 0.0 13.519474916328193 0.0 25 1.276457778606057E-4 0.0 0.0 13.813060205407586 0.0 26 1.276457778606057E-4 0.0 0.0 14.076265799356154 0.0 27 1.276457778606057E-4 0.0 0.0 14.349044826644269 0.0 28 1.276457778606057E-4 0.0 0.0 14.672754519298765 0.0 29 1.276457778606057E-4 0.0 0.0 14.976551470607006 0.0 30 0.004978185336563623 0.0 0.0 15.350553599738582 0.0 31 0.004978185336563623 0.0 0.0 15.640054223926436 0.0 32 0.004978185336563623 0.0 0.0 15.947042319681191 0.0 33 0.004978185336563623 0.0 0.0 16.264114431886938 0.0 34 0.005105831114424228 0.0 0.0 16.559231470300656 0.0 35 0.005105831114424228 0.0 0.0 16.89698219851982 0.0 36 0.005105831114424228 0.0 0.0 17.191205716488515 0.0 37 0.005105831114424228 0.0 0.0 17.49142858601666 0.0 38 0.005105831114424228 0.0 0.0 17.79675728665923 0.0 39 0.005105831114424228 0.0 0.0 18.116637605977907 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACCG 25 3.8896636E-5 45.000004 1 ACACGAT 25 3.8896636E-5 45.000004 28 TAGCCGT 110 0.0 45.000004 44 TAGCACG 30 2.164612E-6 45.000004 1 TCGGACG 25 3.8896636E-5 45.000004 1 CGTAGTG 25 3.8896636E-5 45.000004 28 GCTAACG 50 2.1827873E-11 45.000004 1 CAACGTT 20 7.03191E-4 45.0 31 CGCATCG 35 1.211265E-7 45.0 21 CGCTAAA 20 7.03191E-4 45.0 35 GAACGAT 20 7.03191E-4 45.0 43 GCGATAG 40 6.8102963E-9 45.0 1 TATAGCG 35 1.211265E-7 45.0 1 TAGGCCG 20 7.03191E-4 45.0 1 TTACCGG 70 0.0 45.0 2 TCGACGC 20 7.03191E-4 45.0 19 CGCCCGA 20 7.03191E-4 45.0 20 CTTACCG 35 1.211265E-7 45.0 1 GCGACCG 85 0.0 42.35294 32 CTAACGG 85 0.0 42.35294 2 >>END_MODULE