SRR3552845_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552845_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	316896
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCT	5065	1.598316166818136	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4930	1.5557154397657276	No Hit
AAACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCT	1866	0.5888367161466223	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1175	0.3707841058265172	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTT	1053	0.3322856710087852	No Hit
AATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCT	980	0.3092497223063718	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	901	0.28432040795718466	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGT	858	0.2707512874886398	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCC	856	0.2701201656063819	No Hit
CCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	762	0.24045743714026052	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCT	612	0.1931232959709179	No Hit
ACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTG	432	0.13632232656770676	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	402	0.12685549833383825	No Hit
GAAAAACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCT	361	0.11391749974755125	No Hit
GCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	355	0.11202413410077755	No Hit
AACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTG	333	0.10508179339594062	No Hit
AGCCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCT	330	0.10413511057255377	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	325	0.102557305866909	No Hit
GAACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCT	322	0.10161062304352216	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCC	45	3.8380676E-10	45.000004	5
GGTACCT	90	0.0	45.000004	8
CGGGTAC	40	6.7884685E-9	45.0	6
AGTCCTC	20	7.025544E-4	45.0	21
CGAACAG	20	7.025544E-4	45.0	1
AATCACG	20	7.025544E-4	45.0	1
GTCGAGA	25	3.8843886E-5	45.0	40
GGTCGAG	25	3.8843886E-5	45.0	39
CGAAACG	35	1.2082091E-7	45.0	1
AGCCCGA	20	7.025544E-4	45.0	15
CAGTTAC	20	7.025544E-4	45.0	16
TATGGAT	20	7.025544E-4	45.0	37
TAGAACG	20	7.025544E-4	45.0	1
ATTACGG	35	1.2082091E-7	45.0	2
ATTACCG	20	7.025544E-4	45.0	1
GATCCGT	20	7.025544E-4	45.0	42
GATCCAG	20	7.025544E-4	45.0	1
CCCAGCG	20	7.025544E-4	45.0	1
TTGTAGC	20	7.025544E-4	45.0	11
TAAGTCT	25	3.8843886E-5	45.0	45

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content