##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552845_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 316896 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.054216525295367 31.0 31.0 33.0 28.0 34.0 2 31.33178392911239 31.0 31.0 34.0 30.0 34.0 3 31.535232379077048 31.0 31.0 34.0 30.0 34.0 4 35.49625113601939 37.0 35.0 37.0 33.0 37.0 5 34.83368360597799 35.0 35.0 37.0 32.0 37.0 6 34.90838319196203 35.0 35.0 37.0 32.0 37.0 7 34.858388872058974 35.0 35.0 37.0 32.0 37.0 8 35.27156859032616 37.0 35.0 37.0 33.0 37.0 9 36.77252473997778 39.0 37.0 39.0 32.0 39.0 10 36.199674341108754 38.0 35.0 39.0 32.0 39.0 11 36.38461829748561 38.0 35.0 39.0 32.0 39.0 12 36.066797940018176 37.0 35.0 39.0 32.0 39.0 13 35.651365116631325 37.0 35.0 39.0 30.0 39.0 14 36.66291780268605 38.0 35.0 40.0 31.0 41.0 15 36.666568842774915 38.0 35.0 40.0 31.0 41.0 16 36.596880364536 38.0 35.0 40.0 31.0 41.0 17 36.49628900333232 38.0 35.0 40.0 31.0 41.0 18 36.386114056346564 38.0 35.0 40.0 31.0 41.0 19 36.442867691608605 38.0 35.0 40.0 31.0 41.0 20 36.32448184893467 38.0 35.0 40.0 30.0 41.0 21 36.39500025244875 38.0 35.0 40.0 31.0 41.0 22 36.37327072604261 38.0 35.0 40.0 30.0 41.0 23 36.29993436332425 38.0 35.0 40.0 31.0 41.0 24 35.85128243966475 38.0 34.0 40.0 29.0 41.0 25 36.07660872967787 38.0 34.0 40.0 30.0 41.0 26 35.93087953145511 38.0 34.0 40.0 30.0 41.0 27 35.87883406543472 38.0 34.0 40.0 30.0 41.0 28 35.91649941936787 38.0 34.0 40.0 30.0 41.0 29 35.3636240280723 38.0 34.0 40.0 27.0 41.0 30 35.4714606684843 38.0 34.0 40.0 28.0 41.0 31 35.29389452691104 38.0 34.0 40.0 27.0 41.0 32 35.33090035847723 38.0 34.0 40.0 27.0 41.0 33 35.26848240432192 38.0 34.0 40.0 27.0 41.0 34 35.11255427648187 38.0 34.0 40.0 27.0 41.0 35 35.12202741593457 38.0 34.0 40.0 27.0 41.0 36 35.042720640210035 37.0 34.0 40.0 26.0 41.0 37 34.91263064222963 37.0 33.0 40.0 26.0 41.0 38 34.865832954660206 37.0 33.0 40.0 26.0 41.0 39 34.78622324043219 37.0 33.0 40.0 25.0 41.0 40 34.57738500959305 37.0 33.0 40.0 24.0 41.0 41 34.626057129152784 37.0 33.0 40.0 25.0 41.0 42 34.60644817227103 37.0 33.0 40.0 25.0 41.0 43 34.5505086842371 37.0 33.0 40.0 25.0 41.0 44 34.46692921336969 37.0 33.0 40.0 24.0 41.0 45 34.29240507926891 37.0 33.0 40.0 24.0 41.0 46 34.247888897303845 36.0 33.0 40.0 23.0 41.0 47 34.09038612036757 36.0 33.0 40.0 23.0 41.0 48 34.10684262344744 36.0 33.0 40.0 23.0 41.0 49 33.99643100575583 36.0 33.0 39.0 24.0 41.0 50 33.90084128546905 36.0 33.0 39.0 23.0 41.0 51 32.6933978339897 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 2.0 10 10.0 11 10.0 12 7.0 13 14.0 14 21.0 15 45.0 16 97.0 17 182.0 18 351.0 19 649.0 20 1076.0 21 1554.0 22 2014.0 23 2526.0 24 2916.0 25 3211.0 26 3558.0 27 4122.0 28 5125.0 29 6267.0 30 8073.0 31 10674.0 32 14391.0 33 20098.0 34 31705.0 35 33215.0 36 35536.0 37 47343.0 38 54016.0 39 28084.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.660708876098152 35.33146521256185 19.30980510956276 25.69802080177724 2 22.125870948197516 34.61861304655155 19.839000807836012 23.416515197414924 3 20.747816318287388 34.530255983035445 19.371023932141775 25.350903766535392 4 19.092383621124913 34.169569827325056 19.40005553872564 27.337991012824396 5 16.429680399878823 36.27246793900838 19.39942441684338 27.898427244269413 6 20.135312531556092 37.87204634959103 20.661037059476925 21.331604059375948 7 73.29533979602141 10.741063314147228 8.868524689488035 7.09507220034333 8 75.44620317075633 9.283487327072603 7.4450292840553365 7.825280218115722 9 69.82227607795618 12.025711905483186 12.576681308694335 5.575330707866303 10 36.61958497425023 31.28849843481773 13.754039180046451 18.33787741088559 11 29.29794001817631 28.005717964253257 25.019564778349995 17.67677723922044 12 29.10260779561749 25.260337776431385 28.476850449358782 17.160203978592346 13 24.16376350600828 33.15788145006564 22.84156316267798 19.836791881248107 14 16.036491467232153 34.80100727052408 29.389452691103706 19.77304857114006 15 14.594693527213975 32.635312531556096 31.6412955669999 21.12869837423003 16 16.95792941532869 29.48222760779562 30.488867009996973 23.070975966878724 17 16.07656770675553 29.40018176310209 27.74033121276381 26.78291931737857 18 19.447074118953854 28.00761132990003 26.254670301928705 26.290644249217408 19 21.58594617792588 33.56874179541553 25.421904978289405 19.42340704836918 20 23.79613500959305 29.95683126325356 25.082361405634657 21.164672321518733 21 19.964278501464204 31.85114359285065 25.174505200444308 23.010072705240837 22 18.649336059779863 30.333611026961528 25.33039230536201 25.686660607896595 23 21.035923457538118 30.81705038877108 21.960832575987073 26.186193577703726 24 17.342913763506008 31.103264162375037 26.804061900434213 24.74976017368474 25 20.56983994749066 29.286579824295668 25.069738967989498 25.07384126022417 26 20.267848126830255 33.02976370796728 24.496680298899324 22.20570786630314 27 17.18923558517621 30.572806220337274 25.002208926587905 27.23574926789862 28 21.312039281025953 28.250593254569324 29.29541553064728 21.141951933757447 29 21.218002120569523 29.34369635464001 27.98362869837423 21.45467282641624 30 22.860181258204584 27.603062203372712 24.9062784004847 24.630478137938 31 24.303872563869536 29.604980813894777 25.05680096940321 21.034345652832474 32 26.300111077451277 27.058719579925278 25.091512672927397 21.549656669696052 33 22.171311723720084 26.96657578511562 28.387862263960418 22.474250227203875 34 21.040972432596185 29.668724124002825 25.859903564576392 23.4303998788246 35 22.70871200646269 24.916691911541957 31.023427244269413 21.351168837725943 36 23.151444006866605 26.912299303241443 30.68419923255579 19.25205745733616 37 20.246705543774613 29.3992350802787 27.330101989296175 23.02395738665051 38 22.255250934060385 26.884214379480966 30.36895385236797 20.49158083409068 39 23.459431485408462 25.717585580127235 29.320975966878727 21.50200696758558 40 23.633305563970513 26.020839644552158 26.483767545188325 23.862087246289004 41 19.311382914268403 24.420630112087245 31.204874785418564 25.063112188225787 42 25.813516106230434 24.592295264061395 26.843822579016457 22.75036605069171 43 20.764225487226092 23.903425729576895 29.994067454306776 25.338281328890233 44 22.33193224275472 23.35718974048268 26.238576693931133 28.072301322831468 45 23.656341512672928 26.16094870241341 28.07324800565485 22.109461779258808 46 21.257447238210645 24.556636877713824 31.619206301120872 22.566709582954662 47 20.742136221347067 25.889881853983642 27.326315258002627 26.041666666666668 48 20.82449762698172 23.922043825103504 33.01114561244067 22.2423129354741 49 21.623497929920227 21.779700595779055 31.709141169342626 24.887660304958093 50 19.852254367363425 23.621945370089872 27.496718166212258 29.029082096334445 51 19.71530091891346 23.458484802585076 32.733451984247196 24.092762294254268 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5499.0 1 4317.5 2 3136.0 3 2036.0 4 936.0 5 997.5 6 1059.0 7 979.5 8 900.0 9 890.0 10 880.0 11 885.0 12 890.0 13 903.5 14 917.0 15 951.5 16 986.0 17 976.5 18 967.0 19 1034.0 20 1101.0 21 1083.0 22 1065.0 23 1060.5 24 1056.0 25 1242.5 26 1807.0 27 2185.0 28 2670.5 29 3156.0 30 3370.5 31 3585.0 32 4119.0 33 4653.0 34 5072.5 35 5492.0 36 6037.0 37 6582.0 38 7299.5 39 8017.0 40 10968.5 41 13920.0 42 18943.5 43 23967.0 44 27662.5 45 31358.0 46 35015.0 47 38672.0 48 35093.5 49 31515.0 50 29129.0 51 26743.0 52 23298.0 53 19853.0 54 17591.0 55 15329.0 56 14126.5 57 12924.0 58 11980.0 59 11036.0 60 10386.5 61 9737.0 62 9024.0 63 8311.0 64 7331.5 65 6352.0 66 5063.0 67 3774.0 68 3382.5 69 2991.0 70 2469.0 71 1947.0 72 1733.5 73 1520.0 74 1227.0 75 776.5 76 619.0 77 494.0 78 369.0 79 339.5 80 310.0 81 216.0 82 122.0 83 91.0 84 60.0 85 35.5 86 11.0 87 8.0 88 5.0 89 7.0 90 9.0 91 7.5 92 6.0 93 5.0 94 4.0 95 3.0 96 2.0 97 3.0 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 316896.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.11637370595993 #Duplication Level Percentage of deduplicated Percentage of total 1 76.60071503340119 25.367379051898563 2 10.652746701181634 7.055606815025256 3 3.49495711728615 3.472209179470578 4 1.6756176099028988 2.2196151583132706 5 0.9396999100785788 1.5559726696809577 6 0.6942560589786688 1.379474585805873 7 0.4698153216511009 1.0891005835208536 8 0.3979958465736808 1.0544143350843125 9 0.31420717961189787 0.9364862143010956 >10 4.08668814771454 32.808727963516375 >50 0.5905099786412156 12.325281235310563 >100 0.07181878118609378 4.440298841258699 >500 0.005984898432174481 1.641410872058806 >1k 0.0039899322881163215 2.980899921404441 >5k 9.974830720290804E-4 1.6731225733503428 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCT 5065 1.598316166818136 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4930 1.5557154397657276 No Hit AAACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCT 1866 0.5888367161466223 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1175 0.3707841058265172 No Hit AAAAACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTT 1053 0.3322856710087852 No Hit AATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCT 980 0.3092497223063718 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 901 0.28432040795718466 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGT 858 0.2707512874886398 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCC 856 0.2701201656063819 No Hit CCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC 762 0.24045743714026052 No Hit AAAAAACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCT 612 0.1931232959709179 No Hit ACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTG 432 0.13632232656770676 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 402 0.12685549833383825 No Hit GAAAAACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCT 361 0.11391749974755125 No Hit GCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC 355 0.11202413410077755 No Hit AACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTG 333 0.10508179339594062 No Hit AGCCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCT 330 0.10413511057255377 No Hit GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 325 0.102557305866909 No Hit GAACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCT 322 0.10161062304352216 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.311218822579016E-4 0.0 0.0 1.8955745733616076 0.0 2 6.311218822579016E-4 0.0 0.0 2.4986115318590327 0.0 3 6.311218822579016E-4 0.0 0.0 3.1922144804604664 0.0 4 6.311218822579016E-4 0.0 0.0 6.360446329395133 0.0 5 6.311218822579016E-4 0.0 0.0 6.8792285166111276 0.0 6 6.311218822579016E-4 0.0 0.0 9.096990810865394 0.0 7 6.311218822579016E-4 0.0 0.0 10.832260426133494 0.0 8 6.311218822579016E-4 0.0 0.0 11.789672321518731 0.0 9 6.311218822579016E-4 0.0 0.0 13.367792588104615 0.0 10 6.311218822579016E-4 0.0 0.0 15.419885388266183 0.0 11 6.311218822579016E-4 0.0 0.0 17.82666868625669 0.0 12 6.311218822579016E-4 0.0 0.0 19.00560436231445 0.0 13 6.311218822579016E-4 0.0 0.0 19.57740078764011 0.0 14 9.466828233868524E-4 0.0 0.0 20.108174290619004 0.0 15 9.466828233868524E-4 0.0 0.0 20.513038978087447 0.0 16 9.466828233868524E-4 0.0 0.0 21.317403817025145 0.0 17 9.466828233868524E-4 0.0 0.0 22.30510956275876 0.0 18 9.466828233868524E-4 0.0 0.0 23.63488336867616 0.0 19 9.466828233868524E-4 0.0 0.0 24.17323033424215 0.0 20 9.466828233868524E-4 0.0 0.0 24.69895486216298 0.0 21 9.466828233868524E-4 0.0 0.0 25.25875997172574 0.0 22 9.466828233868524E-4 0.0 0.0 25.81193830152479 0.0 23 9.466828233868524E-4 0.0 0.0 26.357543168736747 0.0 24 9.466828233868524E-4 0.0 0.0 26.760514490558418 0.0 25 9.466828233868524E-4 0.0 0.0 27.108578208623648 0.0 26 9.466828233868524E-4 0.0 0.0 27.414356760577604 0.0 27 9.466828233868524E-4 0.0 0.0 27.734966676764618 0.0 28 9.466828233868524E-4 0.0 0.0 28.062834494597595 0.0 29 0.0012622437645158032 0.0 0.0 28.408689286074928 0.0 30 0.0012622437645158032 0.0 0.0 28.864043724124002 0.0 31 0.0015778047056447541 0.0 0.0 29.197276077956175 0.0 32 0.0015778047056447541 0.0 0.0 29.546602039785924 0.0 33 0.0015778047056447541 0.0 0.0 29.88709229526406 0.0 34 0.0015778047056447541 0.0 0.0 30.217169039684943 0.0 35 0.0015778047056447541 0.0 0.0 30.56681056245582 0.0 36 0.0015778047056447541 0.0 0.0 30.902567403817024 0.0 37 0.0015778047056447541 0.0 0.0 31.234221952943553 0.0 38 0.0015778047056447541 0.0 0.0 31.581654549126526 0.0 39 0.0015778047056447541 0.0 0.0 31.940762900131272 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATGGGCC 45 3.8380676E-10 45.000004 5 GGTACCT 90 0.0 45.000004 8 CGGGTAC 40 6.7884685E-9 45.0 6 AGTCCTC 20 7.025544E-4 45.0 21 CGAACAG 20 7.025544E-4 45.0 1 AATCACG 20 7.025544E-4 45.0 1 GTCGAGA 25 3.8843886E-5 45.0 40 GGTCGAG 25 3.8843886E-5 45.0 39 CGAAACG 35 1.2082091E-7 45.0 1 AGCCCGA 20 7.025544E-4 45.0 15 CAGTTAC 20 7.025544E-4 45.0 16 TATGGAT 20 7.025544E-4 45.0 37 TAGAACG 20 7.025544E-4 45.0 1 ATTACGG 35 1.2082091E-7 45.0 2 ATTACCG 20 7.025544E-4 45.0 1 GATCCGT 20 7.025544E-4 45.0 42 GATCCAG 20 7.025544E-4 45.0 1 CCCAGCG 20 7.025544E-4 45.0 1 TTGTAGC 20 7.025544E-4 45.0 11 TAAGTCT 25 3.8843886E-5 45.0 45 >>END_MODULE