##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552844_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 320144 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.125487280723675 31.0 31.0 33.0 28.0 34.0 2 31.401400619721127 31.0 31.0 34.0 30.0 34.0 3 31.61715665450547 31.0 31.0 34.0 30.0 34.0 4 35.56074453995702 37.0 35.0 37.0 33.0 37.0 5 34.87357564096157 35.0 35.0 37.0 32.0 37.0 6 34.95631340896597 35.0 35.0 37.0 32.0 37.0 7 34.919726747963416 35.0 35.0 37.0 32.0 37.0 8 35.2700597231246 37.0 35.0 37.0 33.0 37.0 9 36.85752036583538 39.0 37.0 39.0 33.0 39.0 10 36.26484019691139 38.0 35.0 39.0 32.0 39.0 11 36.39864873307012 38.0 35.0 39.0 32.0 39.0 12 36.0505584986756 37.0 35.0 39.0 32.0 39.0 13 35.70330226398121 37.0 35.0 39.0 30.0 39.0 14 36.697792243490426 38.0 35.0 40.0 31.0 41.0 15 36.691313908741066 38.0 35.0 40.0 31.0 41.0 16 36.620764406017294 38.0 35.0 40.0 31.0 41.0 17 36.54839072417412 38.0 35.0 40.0 31.0 41.0 18 36.38271527812484 38.0 35.0 40.0 31.0 41.0 19 36.500443550402316 38.0 35.0 40.0 31.0 41.0 20 36.32715278124844 38.0 35.0 40.0 30.0 41.0 21 36.4043367984407 38.0 35.0 40.0 31.0 41.0 22 36.40066969863562 38.0 35.0 40.0 31.0 41.0 23 36.29189677145285 38.0 35.0 40.0 31.0 41.0 24 35.86385501524314 38.0 34.0 40.0 29.0 41.0 25 36.05504398020891 38.0 34.0 40.0 30.0 41.0 26 35.85862299465241 38.0 34.0 40.0 30.0 41.0 27 35.76091383877255 38.0 34.0 40.0 29.0 41.0 28 35.743602878704586 38.0 34.0 40.0 29.0 41.0 29 35.29687890449298 38.0 34.0 40.0 27.0 41.0 30 35.418330501274426 38.0 34.0 40.0 28.0 41.0 31 35.22517679544205 38.0 34.0 40.0 27.0 41.0 32 35.24132265480534 38.0 34.0 40.0 27.0 41.0 33 35.16572854715378 38.0 34.0 40.0 27.0 41.0 34 35.00108701084512 37.0 34.0 40.0 26.0 41.0 35 34.98683717327203 37.0 34.0 40.0 26.0 41.0 36 34.88000399820081 37.0 33.0 40.0 25.0 41.0 37 34.732804612924184 37.0 33.0 40.0 25.0 41.0 38 34.77124981258434 37.0 33.0 40.0 25.0 41.0 39 34.68943350492278 37.0 33.0 40.0 25.0 41.0 40 34.44072042580839 37.0 33.0 40.0 24.0 41.0 41 34.49594557449148 37.0 33.0 40.0 24.0 41.0 42 34.48745876855415 37.0 33.0 40.0 24.0 41.0 43 34.470425808386224 37.0 33.0 40.0 24.0 41.0 44 34.33503048628118 37.0 33.0 40.0 24.0 41.0 45 34.168720950572244 36.0 33.0 40.0 23.0 41.0 46 34.1077671297916 36.0 33.0 40.0 23.0 41.0 47 33.941791818681594 36.0 33.0 39.0 23.0 41.0 48 33.9710567744515 36.0 33.0 39.0 23.0 41.0 49 33.82929556699485 36.0 33.0 39.0 23.0 41.0 50 33.76219451246939 36.0 33.0 39.0 23.0 40.0 51 32.44050177420161 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 7.0 10 4.0 11 13.0 12 2.0 13 7.0 14 41.0 15 54.0 16 77.0 17 168.0 18 349.0 19 683.0 20 1124.0 21 1698.0 22 2130.0 23 2426.0 24 2904.0 25 3365.0 26 3803.0 27 4224.0 28 5382.0 29 6485.0 30 8342.0 31 10889.0 32 14617.0 33 20485.0 34 32131.0 35 34272.0 36 35180.0 37 47849.0 38 53346.0 39 28086.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.806711979609176 35.41781198460693 19.378467189764606 25.397008846019293 2 22.038832525363585 34.923971712729276 19.63460192913189 23.40259383277525 3 20.661952121545305 34.69313808786046 19.438440201909142 25.206469588685092 4 19.08609875556 34.243965215652956 19.42719526213204 27.242740766655004 5 16.494764855814882 36.56354640411815 19.29475486031286 27.64693387975411 6 19.822329951521816 37.967914438502675 20.776275675945826 21.433479934029688 7 73.24204108151332 10.765155679944025 8.953783297516118 7.039019941026538 8 75.54319306312159 9.198360737668049 7.4607051826678 7.797741016542556 9 69.96101754210605 11.97742265980309 12.520615722924683 5.540944075166175 10 36.496389124893795 31.3452696286671 13.796604028187314 18.361737218251786 11 29.33086361137488 27.983969713628866 24.97313708831026 17.71202958668599 12 29.160940076965364 25.13337748013394 28.63555150182418 17.070130941076517 13 24.320930581238443 33.083862261982105 22.661364885801387 19.93384227097806 14 15.929081913139086 34.8205807386676 29.483607376680492 19.76672997151282 15 14.597805987305712 32.79617921935129 31.511444849817583 21.094569943525414 16 16.929256834424507 29.36085011744715 30.558436203708332 23.15145684442001 17 16.054025688440202 29.505784896796445 27.727210255385078 26.712979159378282 18 19.285071717727025 28.013331500824627 26.37125793392973 26.330338847518615 19 21.47221250437303 33.547716027787494 25.40669198860513 19.573379479234347 20 23.794292568344243 30.127380178919488 25.034984257084314 21.043342995651955 21 20.109388275276125 31.76914138637613 25.112761757209256 23.00870858113849 22 18.725635963816284 30.480658703583387 25.202096556549552 25.591608776050776 23 21.074578939477234 30.70836873406967 21.887650557249238 26.32940176920386 24 17.580838622619822 31.10662701784197 26.564920785646457 24.74761357389175 25 20.68694087660553 29.071917637063322 25.02561347393673 25.215528012394422 26 20.21402868709081 33.178819531210955 24.386213703833278 22.22093807786496 27 17.09980508771053 30.460355340096957 25.082150532260485 27.357689039932033 28 21.416612524364037 28.053001149482732 29.23996701484332 21.29041931130991 29 21.26886651007047 29.25308611124994 28.03832025588485 21.439727122794743 30 22.9484232095557 27.531048528162327 24.781036033784797 24.739492228497177 31 24.347168774051678 29.572629816582534 25.11869658653606 20.961504822829728 32 26.337835474036687 26.95162177020341 24.99875056224699 21.71179219351292 33 22.25873356989355 26.841046529061924 28.3125718426708 22.587648058373734 34 21.010857614073668 29.52796241691239 26.048902993652856 23.412276975361088 35 22.828477185266628 24.69513718826528 30.942325953321003 21.534059673147084 36 22.993715328102354 26.5864735868859 30.991678744564943 19.428132340446798 37 20.224024189114896 29.338984956769455 27.400169923534413 23.03682093058124 38 22.258421210455296 26.796691488830028 30.429431755709928 20.515455545004748 39 23.342933180068968 25.702496376630517 29.37396921385377 21.58060122944675 40 23.89674646409116 25.92989404767854 26.29910290369334 23.87425658453696 41 19.323491928632116 24.4449372782248 31.346831425858362 24.884739367284723 42 25.685316607526616 24.497413663851265 26.95661952121545 22.860650207406668 43 20.923396971362887 23.798353241041532 29.994939777100306 25.283310010495274 44 22.35306612024589 23.17176020790644 26.35782647808486 28.11734719376281 45 23.836773451946623 25.99923784297066 27.91025288620121 22.253735818881502 46 21.095819381278424 24.453058623619373 31.7547728522165 22.6963491428857 47 20.81188465190664 25.868359238342748 27.387675546004296 25.93208056374631 48 20.680068968963965 23.822092558348743 33.13477685041731 22.363061622269978 49 21.519691138987458 21.656504572942175 31.657004348043383 25.16679994002699 50 19.924471487830473 23.374481483332502 27.495127192763256 29.205919836073768 51 19.69832325453546 23.45288370233395 32.79617921935129 24.052613823779296 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5515.0 1 4266.5 2 3018.0 3 1994.0 4 970.0 5 991.5 6 1013.0 7 939.0 8 865.0 9 855.0 10 845.0 11 892.0 12 939.0 13 922.0 14 905.0 15 949.5 16 994.0 17 972.5 18 951.0 19 1018.0 20 1085.0 21 1099.5 22 1114.0 23 1082.5 24 1051.0 25 1249.0 26 1855.5 27 2264.0 28 2748.0 29 3232.0 30 3426.0 31 3620.0 32 4188.0 33 4756.0 34 5068.5 35 5381.0 36 5994.0 37 6607.0 38 7373.0 39 8139.0 40 11423.5 41 14708.0 42 19426.0 43 24144.0 44 27883.5 45 31623.0 46 35087.0 47 38551.0 48 35210.0 49 31869.0 50 29702.5 51 27536.0 52 23497.0 53 19458.0 54 17515.5 55 15573.0 56 14298.0 57 13023.0 58 12337.5 59 11652.0 60 10783.5 61 9915.0 62 9061.0 63 8207.0 64 7335.5 65 6464.0 66 5153.5 67 3843.0 68 3435.0 69 3027.0 70 2458.0 71 1889.0 72 1721.0 73 1553.0 74 1246.5 75 755.5 76 571.0 77 461.5 78 352.0 79 323.5 80 295.0 81 207.5 82 120.0 83 91.5 84 63.0 85 40.5 86 18.0 87 14.0 88 10.0 89 10.0 90 10.0 91 10.0 92 10.0 93 7.0 94 4.0 95 3.5 96 3.0 97 2.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 320144.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.85514978033521 #Duplication Level Percentage of deduplicated Percentage of total 1 76.5826050228862 25.16132958595177 2 10.609251473274412 6.971370924233455 3 3.493945306355608 3.443822890938381 4 1.69931267856168 2.2332469031106643 5 0.9564278020576312 1.5711789345340135 6 0.648203710478334 1.277809799756082 7 0.5095812946566391 1.1719658832840705 8 0.36298868123738837 0.9540837992496597 9 0.33008026161633414 0.9760352791443199 >10 4.086612787163851 32.09088479032067 >50 0.6322382882508183 13.106524655279294 >100 0.07778325943779785 4.6056150058560865 >500 0.00498610637421781 1.3996718577944942 >1k 0.00498610637421781 3.3763151906770275 >5k 9.972212748435621E-4 1.6601444998700143 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCT 5067 1.5827252736268678 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4935 1.5414938277775 No Hit AAACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCT 1913 0.5975436053775801 No Hit AAAAACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTT 1232 0.38482682792743267 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1164 0.3635863861262432 No Hit AATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCT 1061 0.3314133639862062 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCC 949 0.29642910690189417 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGT 904 0.2823729321805188 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 865 0.27019091408866014 No Hit CCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC 856 0.267379679144385 No Hit AAAAAACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCT 698 0.21802688790044483 No Hit ACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTG 422 0.1318156829426758 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 398 0.12431905642460893 No Hit GAAAAACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCT 391 0.12213254035683943 No Hit GCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC 382 0.11932130541256435 No Hit AACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTG 346 0.10807636563546404 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 335 0.1046404118146834 No Hit GAACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCT 329 0.10276625518516667 No Hit GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 321 0.1002673796791444 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.1235943825278623E-4 0.0 0.0 1.885089209855565 0.0 2 3.1235943825278623E-4 0.0 0.0 2.5435429056924383 0.0 3 3.1235943825278623E-4 0.0 0.0 3.243852766255185 0.0 4 3.1235943825278623E-4 0.0 0.0 6.429294317557099 0.0 5 3.1235943825278623E-4 0.0 0.0 6.942500874606427 0.0 6 3.1235943825278623E-4 0.0 0.0 9.21866410115448 0.0 7 3.1235943825278623E-4 0.0 0.0 11.01441851166975 0.0 8 3.1235943825278623E-4 0.0 0.0 11.93837773002149 0.0 9 3.1235943825278623E-4 0.0 0.0 13.582950172422409 0.0 10 3.1235943825278623E-4 0.0 0.0 15.642648308261283 0.0 11 3.1235943825278623E-4 0.0 0.0 18.140899095407068 0.0 12 3.1235943825278623E-4 0.0 0.0 19.31505822379929 0.0 13 3.1235943825278623E-4 0.0 0.0 19.89011194962267 0.0 14 6.247188765055725E-4 0.0 0.0 20.409878054875307 0.0 15 6.247188765055725E-4 0.0 0.0 20.810322854715377 0.0 16 6.247188765055725E-4 0.0 0.0 21.596843920235894 0.0 17 6.247188765055725E-4 0.0 0.0 22.570155929831575 0.0 18 6.247188765055725E-4 0.0 0.0 23.904867809485733 0.0 19 6.247188765055725E-4 0.0 0.0 24.461179969013944 0.0 20 6.247188765055725E-4 0.0 0.0 24.990316857414165 0.0 21 6.247188765055725E-4 0.0 0.0 25.57317956919386 0.0 22 6.247188765055725E-4 0.0 0.0 26.134177120295867 0.0 23 6.247188765055725E-4 0.0 0.0 26.692675795891848 0.0 24 6.247188765055725E-4 0.0 0.0 27.064383527412666 0.0 25 6.247188765055725E-4 0.0 0.0 27.387050827127794 0.0 26 6.247188765055725E-4 0.0 0.0 27.710030486281173 0.0 27 6.247188765055725E-4 0.0 0.0 28.02238992453396 0.0 28 9.370783147583587E-4 0.0 0.0 28.343807786496075 0.0 29 9.370783147583587E-4 0.0 0.0 28.70395821880154 0.0 30 9.370783147583587E-4 0.0 0.0 29.134701884152133 0.0 31 9.370783147583587E-4 0.0 0.0 29.49672647308711 0.0 32 9.370783147583587E-4 0.0 0.0 29.82501624269079 0.0 33 9.370783147583587E-4 0.0 0.0 30.167674546454094 0.0 34 9.370783147583587E-4 0.0 0.0 30.492528362236992 0.0 35 9.370783147583587E-4 0.0 0.0 30.82644060172922 0.0 36 9.370783147583587E-4 0.0 0.0 31.182218001899145 0.0 37 9.370783147583587E-4 0.0 0.0 31.498325753410963 0.0 38 9.370783147583587E-4 0.0 0.0 31.84785596481583 0.0 39 9.370783147583587E-4 0.0 0.0 32.236743465440554 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTAT 65 0.0 45.000004 10 ATTACGG 30 2.1605774E-6 45.000004 2 CCATAAT 30 2.1605774E-6 45.000004 11 GAACGTA 65 0.0 45.000004 9 GTCCATA 30 2.1605774E-6 45.000004 9 CCACGAT 60 0.0 45.000004 35 ACAACCG 20 7.0256524E-4 45.0 1 CCGGGTG 25 3.8844788E-5 45.0 5 GTACCGG 25 3.8844788E-5 45.0 2 CGAACAG 25 3.8844788E-5 45.0 1 TCCGCAA 20 7.0256524E-4 45.0 33 CTGTACG 20 7.0256524E-4 45.0 23 GTCGAGA 20 7.0256524E-4 45.0 40 CTCCGAG 20 7.0256524E-4 45.0 16 CAACGGT 20 7.0256524E-4 45.0 32 CGAAACG 20 7.0256524E-4 45.0 1 GGATGCA 20 7.0256524E-4 45.0 8 GGGTCGA 20 7.0256524E-4 45.0 7 CTATATA 25 3.8844788E-5 45.0 39 ACTCTTA 25 3.8844788E-5 45.0 39 >>END_MODULE