SRR3552841_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552841_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	424626
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGCT	4668	1.0993203430783796	Illumina Single End Adapter 1 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3950	0.9302303674292199	No Hit
AAACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCT	1694	0.39893930187977183	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTT	1176	0.27694959799918045	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	929	0.21878076236499883	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	832	0.19593713055724332	No Hit
CCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	786	0.18510406805047266	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCC	665	0.15660840363048895	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	657	0.15472439275974623	No Hit
AATCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCT	599	0.14106531394686148	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCT	597	0.1405943112291758	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGT	539	0.12693523241629104	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	527	0.12410921611017696	No Hit
ACCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTG	440	0.10362059789084982	No Hit
GAAAAACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCT	438	0.10314959517316415	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	434	0.10220758973779279	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	20	7.0282567E-4	45.0	1
AATCCGG	25	3.8866365E-5	45.0	2
ATCTCGC	25	3.8866365E-5	45.0	10
TTAGCAC	25	3.8866365E-5	45.0	34
AAGACCG	35	1.2095006E-7	45.0	1
ACCGACG	20	7.0282567E-4	45.0	1
ATTAACG	35	1.2095006E-7	45.0	1
TACGGGT	50	2.1827873E-11	45.0	4
TCTAGTC	25	3.8866365E-5	45.0	12
ATGTCGT	20	7.0282567E-4	45.0	36
TCGATGG	25	3.8866365E-5	45.0	2
ATCACGC	25	3.8866365E-5	45.0	42
TCGATAG	25	3.8866365E-5	45.0	1
TCTAGCG	25	3.8866365E-5	45.0	1
ATCCGAT	35	1.2095006E-7	45.0	24
GCCGATG	40	6.7975634E-9	45.0	9
CGGATGA	25	3.8866365E-5	45.0	26
CTACGCG	35	1.2095006E-7	45.0	1
CGCAGAC	35	1.2095006E-7	45.0	37
TACTAGA	20	7.0282567E-4	45.0	30