SRR3552833_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552833_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	368593
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT	3259	0.8841730580884607	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2964	0.8041389825634235	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCC	2269	0.6155841266654549	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGT	1898	0.5149311028695608	No Hit
AATCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT	1853	0.5027225150776059	No Hit
AAACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT	1053	0.28568095433174256	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTT	862	0.23386228170366774	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	716	0.19425219686754766	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	574	0.15572731983515695	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	568	0.15409950812956297	No Hit
AACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG	542	0.1470456574053224	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	468	0.12696931303633002	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCT	439	0.1191015564592925	No Hit
AATGACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTT	418	0.11340421548971359	No Hit
CCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	418	0.11340421548971359	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	376	0.10200953355055575	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATACCG	70	0.0	45.000004	1
ACATCCG	35	1.2089185E-7	45.000004	1
CGGAAAC	20	7.027043E-4	45.0	35
AGTCCGG	20	7.027043E-4	45.0	2
CGAAATC	25	3.885631E-5	45.0	35
CCTAGTA	20	7.027043E-4	45.0	43
TTAGCAG	25	3.885631E-5	45.0	1
TTTCGCG	20	7.027043E-4	45.0	36
TTGTCGT	25	3.885631E-5	45.0	28
ATAGCCG	20	7.027043E-4	45.0	1
TGAACTC	20	7.027043E-4	45.0	9
GGTTTAC	20	7.027043E-4	45.0	17
ATCACGC	40	6.7939254E-9	45.0	42
GACCCGG	20	7.027043E-4	45.0	2
GAAAGTG	25	3.885631E-5	45.0	9
ATCCGCG	20	7.027043E-4	45.0	1
ATATCCG	25	3.885631E-5	45.0	1
GTTCGCT	20	7.027043E-4	45.0	19
CTTGCCG	20	7.027043E-4	45.0	43
ACCAGTC	20	7.027043E-4	45.0	39