##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552833_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 368593 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.15010051737282 31.0 31.0 33.0 28.0 34.0 2 31.42348064124929 31.0 31.0 34.0 30.0 34.0 3 31.59295211791868 31.0 31.0 34.0 30.0 34.0 4 35.52184658959882 37.0 35.0 37.0 33.0 37.0 5 34.90616479423104 35.0 35.0 37.0 32.0 37.0 6 35.01592542451973 35.0 35.0 37.0 32.0 37.0 7 34.97355348582312 36.0 35.0 37.0 32.0 37.0 8 35.41658957169561 37.0 35.0 37.0 33.0 37.0 9 36.83299194504508 39.0 37.0 39.0 33.0 39.0 10 36.27826898503227 38.0 35.0 39.0 32.0 39.0 11 36.4685276171821 38.0 35.0 39.0 32.0 39.0 12 36.090576869338264 37.0 35.0 39.0 32.0 39.0 13 35.76453432376632 37.0 35.0 39.0 30.0 39.0 14 36.738687386901 39.0 35.0 40.0 31.0 41.0 15 36.79622239163522 38.0 35.0 40.0 32.0 41.0 16 36.70173877420353 38.0 35.0 40.0 31.0 41.0 17 36.60707609748422 38.0 35.0 40.0 31.0 41.0 18 36.53605738578866 38.0 35.0 40.0 31.0 41.0 19 36.58547503615098 38.0 35.0 40.0 31.0 41.0 20 36.45203788460443 38.0 35.0 40.0 30.0 41.0 21 36.56881167032472 38.0 35.0 40.0 31.0 41.0 22 36.56731137053607 38.0 35.0 40.0 31.0 41.0 23 36.53806773324507 38.0 35.0 40.0 31.0 41.0 24 36.07595912022203 38.0 34.0 40.0 30.0 41.0 25 36.22751924209087 38.0 35.0 40.0 30.0 41.0 26 36.14522793433407 38.0 35.0 40.0 30.0 41.0 27 36.06024531122403 38.0 34.0 40.0 30.0 41.0 28 35.985832612122316 38.0 34.0 40.0 30.0 41.0 29 35.55325792947777 38.0 34.0 40.0 28.0 41.0 30 35.634002816114254 38.0 34.0 40.0 29.0 41.0 31 35.4730692118407 38.0 34.0 40.0 28.0 41.0 32 35.45355988854916 38.0 34.0 40.0 28.0 41.0 33 35.369627203989225 38.0 34.0 40.0 28.0 41.0 34 35.27635901929771 38.0 34.0 40.0 27.0 41.0 35 35.21573931138139 38.0 34.0 40.0 27.0 41.0 36 35.14578139031398 37.0 34.0 40.0 27.0 41.0 37 35.030931135425796 37.0 34.0 40.0 26.0 41.0 38 34.86154104934169 37.0 33.0 40.0 26.0 41.0 39 34.830512245213555 37.0 33.0 40.0 26.0 41.0 40 34.687229545867666 37.0 33.0 40.0 25.0 41.0 41 34.77728822847965 37.0 33.0 40.0 26.0 41.0 42 34.70834497670873 37.0 33.0 40.0 26.0 41.0 43 34.681895749512336 37.0 33.0 40.0 26.0 41.0 44 34.55980987159278 37.0 33.0 40.0 25.0 41.0 45 34.38476856587076 36.0 33.0 40.0 24.0 41.0 46 34.322244318258896 36.0 33.0 40.0 24.0 41.0 47 34.212383306248356 36.0 33.0 40.0 24.0 41.0 48 34.237207434758666 36.0 33.0 40.0 24.0 41.0 49 34.1731720352801 36.0 33.0 39.0 24.0 41.0 50 34.06289593128464 36.0 33.0 39.0 24.0 41.0 51 32.83957915641371 35.0 31.0 39.0 21.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 8.0 10 6.0 11 11.0 12 9.0 13 15.0 14 31.0 15 57.0 16 102.0 17 183.0 18 341.0 19 644.0 20 1066.0 21 1729.0 22 2139.0 23 2535.0 24 2961.0 25 3395.0 26 3867.0 27 4623.0 28 5571.0 29 7155.0 30 9476.0 31 12468.0 32 16496.0 33 23982.0 34 37039.0 35 38190.0 36 40675.0 37 54145.0 38 62205.0 39 37467.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.266798338546852 33.94448619480023 19.80043028489418 25.98828518175874 2 24.542245783289427 33.831624583212374 18.572246353023523 23.053883280474672 3 20.704950989302564 31.556757724644797 21.33084459010345 26.40744669594919 4 20.829749886731435 32.930630804166114 18.797426972297355 27.442192336805093 5 17.110471441400136 35.68488821003112 17.67803512275057 29.52660522581818 6 19.14496477144167 36.96841773989197 21.427156782684424 22.459460705981936 7 77.9152072882556 9.700943859487293 6.84901775128665 5.534831100970447 8 79.94563108903317 7.085321750548708 5.669939472534747 7.299107687883384 9 74.93902488652796 9.807294224252766 9.963021544087923 5.290659345131351 10 38.17272710008058 32.32155792432304 12.93052228338574 16.57519269221065 11 31.30526081613053 27.078376420604837 23.408474930343225 18.207887832921408 12 30.215440879235363 23.66105704666122 28.583559644377406 17.539942429726015 13 26.202071119093418 30.986209721834108 22.320011503202718 20.491707655869753 14 17.847598842083272 32.79226680919062 30.323961659608294 19.03617268911781 15 17.035049499040948 29.162518007666993 31.360877716071656 22.441554777220404 16 19.713071056693966 27.466880814339934 30.278111629900728 22.541936499065365 17 18.5879818661776 27.215112603874736 26.804904054065055 27.392001475882616 18 23.198758522272534 27.32905942326631 24.671656813884148 24.800525240577002 19 22.47031278401923 31.90890765695496 25.241119608891104 20.3796599501347 20 24.667858586571096 30.707040014324743 23.512654879501238 21.112446519602923 21 21.838721842248766 29.976966464365844 25.95193072033381 22.232380973051576 22 20.2630001112338 29.218948813460916 25.509979842265047 25.008071233040237 23 20.57635386456064 29.260186710002635 23.287474260227405 26.875985165209322 24 19.316427604430903 30.513059119408126 27.486414554807066 22.684098721353905 25 20.070104424120913 29.48916555658952 25.010512950598628 25.43021706869094 26 21.857712978814032 31.564354179270904 22.864514518723905 23.713418323191163 27 18.42058856245235 29.20999584908015 25.34394304829446 27.025472540173034 28 19.52587271055066 31.227668458163883 27.109847446912987 22.136611384372465 29 20.9922597553399 30.920554649708485 25.872439248710638 22.214746346240975 30 22.970593581538445 29.470174420024254 24.737583187960706 22.821648810476596 31 25.65376987625918 30.66742992948862 20.906799640796216 22.772000553455978 32 25.14616392606479 29.465833588809335 22.272804963740494 23.115197521385376 33 25.43482920185679 28.69479344425966 22.543835612721892 23.32654174116166 34 19.934182146703815 29.80360451772009 23.90767052005871 26.354542815517384 35 24.224279896796737 28.852148575800406 24.644797920741848 22.278773606661005 36 26.00347809101095 27.919955072396924 24.483644561888042 21.592922274704076 37 21.866123339292933 31.487033123255188 22.381597046064357 24.26524649138752 38 24.012393073118588 29.950378873174476 23.751400596321687 22.285827457385246 39 22.203080362350885 26.858621840349656 24.701771330437637 26.236526466861825 40 26.870016522288815 26.41748486813369 21.94615741481797 24.76634119475953 41 22.587243924871064 22.44101217331854 26.910169211026798 28.0615746907836 42 25.699891207917673 26.262842756102263 23.124150485766144 24.91311555021392 43 23.16104755109294 24.445119684855655 26.832848155011085 25.56098460904032 44 22.964896240568866 24.84990219564669 24.647510940251173 27.537690623533273 45 24.48201675018245 27.483972837248672 24.99911826865947 23.034892143909406 46 21.690862278990647 25.512692861774365 28.27129109885429 24.52515376038069 47 22.36206330559723 27.18635459707591 24.374038573711385 26.077543523615475 48 22.189515264804268 23.805932288459086 30.44848925508623 23.556063191650413 49 23.703651452957597 22.483606579614914 28.185017078457815 25.627724888969677 50 21.182442422943463 24.069095180863446 26.636696844487005 28.111765551706082 51 20.383186875496822 24.196335795850707 29.816355709413905 25.604121619238562 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3448.0 1 2799.0 2 2150.0 3 1502.5 4 855.0 5 1032.5 6 1210.0 7 1086.0 8 962.0 9 919.5 10 877.0 11 856.0 12 835.0 13 931.0 14 1027.0 15 990.0 16 953.0 17 1042.5 18 1132.0 19 1063.0 20 994.0 21 991.0 22 988.0 23 1322.0 24 1656.0 25 1799.0 26 2357.0 27 2772.0 28 3311.0 29 3850.0 30 4344.0 31 4838.0 32 5455.0 33 6072.0 34 6750.0 35 7428.0 36 7791.0 37 8154.0 38 9325.0 39 10496.0 40 11559.5 41 12623.0 42 16101.5 43 19580.0 44 20673.5 45 21767.0 46 27459.0 47 33151.0 48 32559.0 49 31967.0 50 34202.5 51 36438.0 52 33487.5 53 30537.0 54 27504.0 55 24471.0 56 23381.0 57 22291.0 58 20012.0 59 17733.0 60 16699.5 61 15666.0 62 13390.0 63 11114.0 64 9593.5 65 8073.0 66 7202.5 67 6332.0 68 5479.5 69 4627.0 70 3851.5 71 3076.0 72 2678.5 73 2281.0 74 1852.0 75 1295.5 76 1168.0 77 874.5 78 581.0 79 468.0 80 355.0 81 315.0 82 275.0 83 204.5 84 134.0 85 158.0 86 182.0 87 113.0 88 44.0 89 44.5 90 45.0 91 27.0 92 9.0 93 7.0 94 5.0 95 4.0 96 3.0 97 2.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 368593.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.765733255315105 #Duplication Level Percentage of deduplicated Percentage of total 1 76.10350290403633 21.891730643326078 2 10.01766744021902 5.763310988515913 3 3.278400958639036 2.8291682244053957 4 1.5418880770625742 1.7741416453733103 5 0.96824729195583 1.392617166279131 6 0.6622756327262302 1.1430506515498666 7 0.4859781134306772 0.978566174520769 8 0.42622279746812547 0.9808489039441833 9 0.3575086640635774 0.9255598980225233 >10 5.062878157503061 35.197615219344144 >50 1.009787256705524 18.64697288044736 >100 0.07468840656105946 3.733175877622976 >500 0.004979227104070631 0.9344398183552908 >1k 0.005975072524884757 3.8088019082930553 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT 3259 0.8841730580884607 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2964 0.8041389825634235 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCC 2269 0.6155841266654549 No Hit AATGATACCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGT 1898 0.5149311028695608 No Hit AATCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT 1853 0.5027225150776059 No Hit AAACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT 1053 0.28568095433174256 No Hit AAAAACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTT 862 0.23386228170366774 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 716 0.19425219686754766 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 574 0.15572731983515695 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 568 0.15409950812956297 No Hit AACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG 542 0.1470456574053224 No Hit GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 468 0.12696931303633002 No Hit AAAAAACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCT 439 0.1191015564592925 No Hit AATGACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTT 418 0.11340421548971359 No Hit CCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC 418 0.11340421548971359 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 376 0.10200953355055575 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.426039018646583E-4 0.0 0.0 1.1166788300374668 0.0 2 5.426039018646583E-4 0.0 0.0 1.411855352651841 0.0 3 5.426039018646583E-4 0.0 0.0 1.9077953189561385 0.0 4 5.426039018646583E-4 0.0 0.0 4.055692864487389 0.0 5 5.426039018646583E-4 0.0 0.0 4.376914374391267 0.0 6 5.426039018646583E-4 0.0 0.0 5.993874001947948 0.0 7 5.426039018646583E-4 0.0 0.0 7.181633943129685 0.0 8 5.426039018646583E-4 0.0 0.0 7.781753858591997 0.0 9 5.426039018646583E-4 0.0 0.0 9.182757133206545 0.0 10 5.426039018646583E-4 0.0 0.0 10.417452311899575 0.0 11 5.426039018646583E-4 0.0 0.0 12.542289191601578 0.0 12 5.426039018646583E-4 0.0 0.0 13.381697427786204 0.0 13 5.426039018646583E-4 0.0 0.0 13.712414505972712 0.0 14 5.426039018646583E-4 0.0 0.0 14.118824828469341 0.0 15 5.426039018646583E-4 0.0 0.0 14.402064065242692 0.0 16 5.426039018646583E-4 0.0 0.0 14.961759990016088 0.0 17 5.426039018646583E-4 0.0 0.0 15.640014867346911 0.0 18 5.426039018646583E-4 0.0 0.0 16.67665962185934 0.0 19 5.426039018646583E-4 0.0 0.0 17.07248916826961 0.0 20 5.426039018646583E-4 0.0 0.0 17.484325529784886 0.0 21 5.426039018646583E-4 0.0 0.0 17.91135480055237 0.0 22 5.426039018646583E-4 0.0 0.0 18.328617201086292 0.0 23 5.426039018646583E-4 0.0 0.0 18.750491734786063 0.0 24 5.426039018646583E-4 0.0 0.0 19.04919518276256 0.0 25 5.426039018646583E-4 0.0 0.0 19.311815471265053 0.0 26 5.426039018646583E-4 0.0 0.0 19.534554372980494 0.0 27 5.426039018646583E-4 0.0 0.0 19.850078541914794 0.0 28 5.426039018646583E-4 0.0 0.0 20.121109190896192 0.0 29 5.426039018646583E-4 0.0 0.0 20.41791352521616 0.0 30 5.426039018646583E-4 0.0 0.0 20.799635370177946 0.0 31 5.426039018646583E-4 0.0 0.0 21.05981394112205 0.0 32 5.426039018646583E-4 0.0 0.0 21.325418551084802 0.0 33 5.426039018646583E-4 0.0 0.0 21.591023161047552 0.0 34 5.426039018646583E-4 0.0 0.0 21.862053810028947 0.0 35 5.426039018646583E-4 0.0 0.0 22.181918810178164 0.0 36 8.139058527969875E-4 0.0 0.0 22.439655663563876 0.0 37 8.139058527969875E-4 0.0 0.0 22.714213237907394 0.0 38 8.139058527969875E-4 0.0 0.0 22.994468153220488 0.0 39 8.139058527969875E-4 0.0 0.0 23.373205676722023 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATACCG 70 0.0 45.000004 1 ACATCCG 35 1.2089185E-7 45.000004 1 CGGAAAC 20 7.027043E-4 45.0 35 AGTCCGG 20 7.027043E-4 45.0 2 CGAAATC 25 3.885631E-5 45.0 35 CCTAGTA 20 7.027043E-4 45.0 43 TTAGCAG 25 3.885631E-5 45.0 1 TTTCGCG 20 7.027043E-4 45.0 36 TTGTCGT 25 3.885631E-5 45.0 28 ATAGCCG 20 7.027043E-4 45.0 1 TGAACTC 20 7.027043E-4 45.0 9 GGTTTAC 20 7.027043E-4 45.0 17 ATCACGC 40 6.7939254E-9 45.0 42 GACCCGG 20 7.027043E-4 45.0 2 GAAAGTG 25 3.885631E-5 45.0 9 ATCCGCG 20 7.027043E-4 45.0 1 ATATCCG 25 3.885631E-5 45.0 1 GTTCGCT 20 7.027043E-4 45.0 19 CTTGCCG 20 7.027043E-4 45.0 43 ACCAGTC 20 7.027043E-4 45.0 39 >>END_MODULE