##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552826_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 303563 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.013779676706317 31.0 31.0 33.0 28.0 34.0 2 31.28647101260694 31.0 31.0 34.0 28.0 34.0 3 31.534788495304106 31.0 31.0 34.0 30.0 34.0 4 35.500802139918235 37.0 35.0 37.0 33.0 37.0 5 34.76514924414372 35.0 35.0 37.0 32.0 37.0 6 34.86000270125147 35.0 35.0 37.0 32.0 37.0 7 34.88990423734118 35.0 35.0 37.0 32.0 37.0 8 35.27236850340786 37.0 35.0 37.0 33.0 37.0 9 36.824280297664735 39.0 37.0 39.0 33.0 39.0 10 36.066786795492206 37.0 35.0 39.0 31.0 39.0 11 36.289103085685674 37.0 35.0 39.0 32.0 39.0 12 36.048250280831326 37.0 35.0 39.0 32.0 39.0 13 35.79830216462481 37.0 35.0 39.0 30.0 39.0 14 36.81613042432708 38.0 35.0 40.0 31.0 41.0 15 36.785576634833625 38.0 35.0 40.0 32.0 41.0 16 36.655979154244754 38.0 35.0 40.0 31.0 41.0 17 36.62259234491687 38.0 35.0 40.0 31.0 41.0 18 36.47070295128194 38.0 35.0 40.0 31.0 41.0 19 36.57375240065489 38.0 35.0 40.0 31.0 41.0 20 36.39888919268817 38.0 35.0 40.0 30.0 41.0 21 36.511969508800476 38.0 35.0 40.0 31.0 41.0 22 36.51142267008825 38.0 35.0 40.0 31.0 41.0 23 36.38467797458847 38.0 35.0 40.0 31.0 41.0 24 35.92274420795683 38.0 34.0 40.0 29.0 41.0 25 36.14695466838844 38.0 34.0 40.0 30.0 41.0 26 35.90350932096467 38.0 34.0 40.0 30.0 41.0 27 35.83500624252626 38.0 34.0 40.0 29.0 41.0 28 35.85468584774824 38.0 34.0 40.0 29.0 41.0 29 35.495033979766966 38.0 34.0 40.0 27.0 41.0 30 35.54700342268327 38.0 34.0 40.0 28.0 41.0 31 35.36403975451554 38.0 34.0 40.0 27.0 41.0 32 35.3185401382909 38.0 34.0 40.0 27.0 41.0 33 35.17530792619654 38.0 34.0 40.0 27.0 41.0 34 35.185651742801326 38.0 34.0 40.0 27.0 41.0 35 34.9825308090907 38.0 34.0 40.0 25.0 41.0 36 34.967687102841914 37.0 33.0 40.0 26.0 41.0 37 34.955795007955516 37.0 33.0 40.0 26.0 41.0 38 34.896726544407585 37.0 33.0 40.0 26.0 41.0 39 34.86324749722463 37.0 33.0 40.0 26.0 41.0 40 34.53518709460639 37.0 33.0 40.0 24.0 41.0 41 34.728725174016596 37.0 33.0 40.0 25.0 41.0 42 34.71574928433307 37.0 33.0 40.0 25.0 41.0 43 34.75571792346235 37.0 33.0 40.0 25.0 41.0 44 34.65835098480381 37.0 33.0 40.0 25.0 41.0 45 34.51581385083162 37.0 33.0 40.0 24.0 41.0 46 34.438762299753265 37.0 33.0 40.0 24.0 41.0 47 34.3184742541087 37.0 33.0 40.0 24.0 41.0 48 34.348253904461345 37.0 33.0 40.0 24.0 41.0 49 34.24508256935134 37.0 33.0 40.0 24.0 41.0 50 34.1958539084144 37.0 33.0 40.0 24.0 41.0 51 32.87927382454384 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 2.0 11 6.0 12 3.0 13 13.0 14 18.0 15 35.0 16 68.0 17 143.0 18 301.0 19 566.0 20 927.0 21 1263.0 22 1782.0 23 2131.0 24 2440.0 25 2674.0 26 3251.0 27 3798.0 28 4626.0 29 5866.0 30 7718.0 31 10268.0 32 13720.0 33 19293.0 34 29376.0 35 33780.0 36 37736.0 37 47849.0 38 49878.0 39 24028.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.687389438106752 36.27879550538109 20.781847590121323 24.25196746639083 2 19.925682642482776 36.93928443189717 20.756482179975823 22.378550745644233 3 19.899987811426293 33.774537740106666 22.1703567299045 24.15511771856254 4 19.760972186992486 33.66088752581836 19.63480397808692 26.94333630910223 5 16.816278663737016 36.95509663562424 19.463505104377017 26.765119596261734 6 20.67050332220989 36.050836234982526 21.570481251008854 21.708179191798738 7 74.35688802653814 10.24367264785234 8.907212012004099 6.4922273136054125 8 76.40226246281662 7.675836646758663 6.92245102334606 8.999449867078663 9 71.14569298629938 10.946656871884914 12.345048638997506 5.562601502818196 10 34.1863138788324 36.71461937060841 13.512845768423688 15.586220982135504 11 24.469714688549 26.026228492932272 31.30453974957422 18.199517068944502 12 26.203786363950808 24.381429884406202 31.761775974015276 17.653007777627707 13 21.835006242526266 32.36099261108897 26.230798878651218 19.57320226773355 14 16.028962686493415 33.14699090468865 32.100091249592346 18.723955159225596 15 14.430941847326583 32.30499105622226 31.635937186020698 21.628129910430456 16 16.130753747986414 30.41543271083762 31.413578071108798 22.040235470067167 17 16.36266606931675 29.522372621169247 29.2278703267526 24.887090982761404 18 17.898096935397266 29.133985367123135 27.532011477024536 25.435906220455063 19 19.4552695816025 34.03510968069231 27.939834564818504 18.569786172886683 20 21.11423328930074 32.808346208200604 26.143502337241365 19.933918165257296 21 18.076313648237765 32.69403715209034 26.272305913434774 22.957343286237123 22 17.32819875940085 31.474191518729228 27.568906619054363 23.62870310281556 23 19.8354213128741 30.91615249552811 23.62870310281556 25.61972308878223 24 15.931124675932178 33.04454100137369 27.586695348247314 23.43763897444682 25 17.634230785701817 30.484611102143543 26.694294100400906 25.18686401175374 26 19.34128994640322 36.0462243422288 22.91748335600847 21.695002355359513 27 15.474547293313085 32.19990578561946 25.882930396655716 26.44261652441174 28 19.208862740189023 28.62634774330205 27.72340502630426 24.44138449020467 29 19.99354335014478 31.8971679684283 25.79299848795802 22.3162901934689 30 19.534330600237844 29.139256101698823 24.471361793103902 26.85505150495943 31 25.818363898103524 32.00324150176405 19.620968299825737 22.55742630030669 32 24.339922849622646 29.35601506112405 21.671613470679894 24.63244861857341 33 22.274124316863386 27.406172689029955 25.57920431673162 24.74049867737504 34 23.379990315025218 28.13056927227627 22.997203216465774 25.492237196232743 35 20.813801418486445 26.448216679898408 27.80608967496039 24.931892226654764 36 24.192671702414327 26.800038212825672 27.984965229622844 21.022324855137153 37 22.76463205331348 28.20963029091161 25.15326307883372 23.872474576941194 38 25.203335057302766 26.592503038907907 28.66719593626364 19.53696596752569 39 24.91311523472887 25.123944617756443 29.20546970480592 20.75747044270876 40 24.472679476747825 26.166891221920984 27.07543409440544 22.284995206925746 41 21.847194816232545 23.278858095354177 31.666573330741887 23.20737375767139 42 24.4815738413443 25.78212759789566 26.388262074099938 23.3480364866601 43 20.327905574790076 26.198845050286103 28.738680273946432 24.734569100977392 44 22.660205624532633 25.258348349436528 25.803869378020377 26.277576648010463 45 25.57854547490966 27.314264254866373 25.23726541113377 21.869924859090204 46 20.58320678080003 25.892483603074158 31.295315964066766 22.228993652059046 47 21.925267572134942 25.901048546759654 26.71340051323778 25.460283367867625 48 22.756067109627985 22.981391012738705 33.005998754788955 21.256543122844352 49 22.498130536330187 21.645259797801444 30.465504689306666 25.391104976561703 50 20.69422162780049 23.39184946782052 27.06719857163093 28.84673033274806 51 19.353807941020477 24.01412556866285 32.761897859752345 23.870168630564333 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3496.0 1 2800.5 2 2105.0 3 1421.0 4 737.0 5 905.0 6 1073.0 7 1020.5 8 968.0 9 968.5 10 969.0 11 1023.0 12 1077.0 13 1115.5 14 1154.0 15 1167.5 16 1181.0 17 1150.5 18 1120.0 19 1143.0 20 1166.0 21 1208.5 22 1251.0 23 1262.5 24 1274.0 25 1554.0 26 1945.5 27 2057.0 28 2308.5 29 2560.0 30 3137.0 31 3714.0 32 4374.5 33 5035.0 34 5923.5 35 6812.0 36 7789.5 37 8767.0 38 9542.5 39 10318.0 40 11564.0 41 12810.0 42 15020.5 43 17231.0 44 19509.5 45 21788.0 46 26459.5 47 31131.0 48 32787.5 49 34444.0 50 35696.5 51 36949.0 52 33409.0 53 29869.0 54 25261.0 55 20653.0 56 17399.5 57 14146.0 58 11521.0 59 8896.0 60 7546.5 61 6197.0 62 5130.5 63 4064.0 64 3422.5 65 2781.0 66 2173.0 67 1565.0 68 1176.0 69 787.0 70 626.5 71 466.0 72 475.5 73 485.0 74 366.0 75 192.5 76 138.0 77 134.0 78 130.0 79 100.5 80 71.0 81 44.0 82 17.0 83 17.5 84 18.0 85 11.0 86 4.0 87 4.0 88 4.0 89 2.5 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 303563.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.35831809931182 #Duplication Level Percentage of deduplicated Percentage of total 1 78.84823773290752 33.39878735460658 2 9.320025241187412 7.895611877196637 3 3.317092108145814 4.2151932804467185 4 1.6298440567978392 2.761498120404629 5 1.0513702510590013 2.226713776725526 6 0.7594345227257621 1.9301021453530136 7 0.5760398255329625 1.7080054717458117 8 0.4855822586898211 1.6454758221572614 9 0.40295477753037184 1.5361637981642027 >10 3.402097854474374 29.285274735379502 >50 0.16133655558822735 4.341040805833337 >100 0.03741137520886431 3.2872266562995316 >500 0.0038970182509233658 1.1261153082894146 >1k 0.004676421901108039 4.642790847397841 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT 3802 1.2524583035481927 Illumina Single End Adapter 1 (95% over 21bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3000 0.9882627329417616 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCC 2131 0.7019959612996314 No Hit AATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCT 1990 0.6555476128513686 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGT 1967 0.6479709318988152 No Hit AAACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCT 1173 0.3864107285802288 No Hit AAAAACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTT 958 0.31558523271940253 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 754 0.24838336687936277 No Hit CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC 608 0.20028791387619702 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 581 0.1913935492797212 No Hit AAAAAACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCT 510 0.16800466460009947 No Hit AATGACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTT 476 0.15680435362675954 No Hit AACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTG 471 0.15515724907185657 No Hit GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 429 0.1413215708106719 No Hit AATGATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCT 385 0.1268270507275261 No Hit AACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCT 347 0.11430905611026376 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 342 0.11266195155536084 No Hit ACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTG 336 0.1106854260894773 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTAT 314 0.10343816604790439 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.588418219611744E-4 0.0 0.0 1.5008416704275553 0.0 2 6.588418219611744E-4 0.0 0.0 2.0410919644357186 0.0 3 6.588418219611744E-4 0.0 0.0 2.7216755665216117 0.0 4 6.588418219611744E-4 0.0 0.0 6.036638193719261 0.0 5 6.588418219611744E-4 0.0 0.0 6.540322766608579 0.0 6 6.588418219611744E-4 0.0 0.0 8.999449867078662 0.0 7 6.588418219611744E-4 0.0 0.0 10.915691306252738 0.0 8 6.588418219611744E-4 0.0 0.0 12.093700483919319 0.0 9 6.588418219611744E-4 0.0 0.0 14.368681295151253 0.0 10 6.588418219611744E-4 0.0 0.0 16.724370229573434 0.0 11 6.588418219611744E-4 0.0 0.0 19.787984701692896 0.0 12 6.588418219611744E-4 0.0 0.0 21.123127653897214 0.0 13 9.882627329417617E-4 0.0 0.0 21.684790307119115 0.0 14 9.882627329417617E-4 0.0 0.0 22.30508988249556 0.0 15 9.882627329417617E-4 0.0 0.0 22.722795597618944 0.0 16 9.882627329417617E-4 0.0 0.0 23.49989952662215 0.0 17 9.882627329417617E-4 0.0 0.0 24.57117632913102 0.0 18 9.882627329417617E-4 0.0 0.0 25.93893195152242 0.0 19 9.882627329417617E-4 0.0 0.0 26.592503038907903 0.0 20 9.882627329417617E-4 0.0 0.0 27.181837048652174 0.0 21 9.882627329417617E-4 0.0 0.0 27.849902656120804 0.0 22 9.882627329417617E-4 0.0 0.0 28.595052756758893 0.0 23 9.882627329417617E-4 0.0 0.0 29.304295978100097 0.0 24 9.882627329417617E-4 0.0 0.0 29.82741638473727 0.0 25 9.882627329417617E-4 0.0 0.0 30.273122877294004 0.0 26 9.882627329417617E-4 0.0 0.0 30.695111064260136 0.0 27 9.882627329417617E-4 0.0 0.0 31.13982929408393 0.0 28 9.882627329417617E-4 0.0 0.0 31.60595988312146 0.0 29 9.882627329417617E-4 0.0 0.0 32.05990189845271 0.0 30 9.882627329417617E-4 0.0 0.0 32.71017877672839 0.0 31 0.0013176836439223489 0.0 0.0 33.16939152663533 0.0 32 0.0013176836439223489 0.0 0.0 33.58709724175871 0.0 33 0.0013176836439223489 0.0 0.0 34.031156629760545 0.0 34 0.0013176836439223489 0.0 0.0 34.43930913846549 0.0 35 0.0013176836439223489 0.0 0.0 34.90313378112616 0.0 36 0.0013176836439223489 0.0 0.0 35.33698112088759 0.0 37 0.0013176836439223489 0.0 0.0 35.781699350711385 0.0 38 0.0013176836439223489 0.0 0.0 36.1717337093124 0.0 39 0.0013176836439223489 0.0 0.0 36.59075710807971 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACAGTAG 30 2.1602063E-6 45.000004 1 CACGGGT 30 2.1602063E-6 45.000004 4 ATTACCG 30 2.1602063E-6 45.000004 1 CGATTGG 30 2.1602063E-6 45.000004 2 ATATAGG 35 1.2079727E-7 45.000004 2 TCTCGTA 65 0.0 45.000004 28 CCGACGG 30 2.1602063E-6 45.000004 2 CGTAACG 30 2.1602063E-6 45.000004 1 ATAACGG 30 2.1602063E-6 45.000004 2 TTTCTAC 30 2.1602063E-6 45.000004 40 ATTGACG 35 1.2079727E-7 45.000004 1 AGTACGG 30 2.1602063E-6 45.000004 2 TGCAACG 30 2.1602063E-6 45.000004 1 TATCCGG 30 2.1602063E-6 45.000004 2 CGGAAAG 20 7.0250774E-4 45.0 1 TCGTTGC 20 7.0250774E-4 45.0 16 GTACCGC 20 7.0250774E-4 45.0 29 CTCGTTG 20 7.0250774E-4 45.0 15 GCGAATG 25 3.8840015E-5 45.0 1 CCGGCTA 25 3.8840015E-5 45.0 41 >>END_MODULE