SRR3552821_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552821_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1158992
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGC	4387	0.3785185747615169	No Hit
CTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGCT	3662	0.31596421718182693	No Hit
CCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGC	3300	0.28473017932824385	No Hit
TCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGC	2229	0.19232229385535016	No Hit
ACTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGC	1442	0.12441846017919019	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTACGG	50	2.1827873E-11	45.0	2
TCCGATC	20	7.033312E-4	45.0	15
ACCGAGT	20	7.033312E-4	45.0	17
CGTTACG	25	3.8908256E-5	45.0	20
TACGCGC	20	7.033312E-4	45.0	13
TCCACGT	25	3.8908256E-5	45.0	23
CGAATCC	20	7.033312E-4	45.0	44
CGTCGCA	20	7.033312E-4	45.0	32
ACCCGTT	20	7.033312E-4	45.0	42
CCAACCG	20	7.033312E-4	45.0	2
GTAACGT	20	7.033312E-4	45.0	9
ATACCCG	20	7.033312E-4	45.0	26
CGATCAA	65	0.0	41.53846	10
CGACAAT	40	3.4582627E-7	39.375	20
TATACGG	80	0.0	39.375	2
ACGCGAT	35	6.248334E-6	38.571426	12
TACGACG	35	6.248334E-6	38.571426	1
TTACGCG	70	0.0	38.571426	1
CGTAAGG	150	0.0	37.500004	2
CGAGTTA	30	1.1399279E-4	37.499996	40