##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552821_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1158992 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.802405883733453 31.0 31.0 34.0 30.0 34.0 2 31.975646941480182 33.0 31.0 34.0 30.0 34.0 3 32.01580770186507 33.0 31.0 34.0 30.0 34.0 4 35.63025111476179 37.0 35.0 37.0 33.0 37.0 5 35.50020017394426 37.0 35.0 37.0 33.0 37.0 6 35.46592556290294 37.0 35.0 37.0 33.0 37.0 7 35.80007713599404 37.0 35.0 37.0 35.0 37.0 8 35.771116625481454 37.0 35.0 37.0 35.0 37.0 9 37.37066433590569 39.0 37.0 39.0 35.0 39.0 10 36.852970512307245 39.0 37.0 39.0 32.0 39.0 11 36.67088383698938 39.0 35.0 39.0 32.0 39.0 12 36.46328188632881 38.0 35.0 39.0 32.0 39.0 13 36.370488320885734 38.0 35.0 39.0 32.0 39.0 14 37.407485987823904 39.0 36.0 41.0 32.0 41.0 15 37.510091527810374 39.0 36.0 41.0 32.0 41.0 16 37.58813520714552 39.0 36.0 41.0 33.0 41.0 17 37.57481156039041 39.0 36.0 41.0 33.0 41.0 18 37.522497998260555 39.0 36.0 41.0 32.0 41.0 19 37.48040711238732 39.0 36.0 41.0 32.0 41.0 20 37.422410163314325 39.0 35.0 41.0 32.0 41.0 21 37.33278573104905 39.0 35.0 41.0 32.0 41.0 22 37.29962760743819 39.0 35.0 41.0 32.0 41.0 23 37.25613205268026 39.0 35.0 41.0 32.0 41.0 24 37.225869548711294 39.0 35.0 41.0 32.0 41.0 25 37.15461021301269 39.0 35.0 41.0 32.0 41.0 26 37.04763967309524 39.0 35.0 41.0 31.0 41.0 27 36.97405158965722 39.0 35.0 41.0 31.0 41.0 28 36.8771095917832 39.0 35.0 40.0 31.0 41.0 29 36.85461590761627 39.0 35.0 40.0 31.0 41.0 30 36.74039855322556 39.0 35.0 40.0 31.0 41.0 31 36.595602903212445 39.0 35.0 40.0 30.0 41.0 32 36.48423802752737 38.0 35.0 40.0 30.0 41.0 33 36.38978526167566 38.0 35.0 40.0 30.0 41.0 34 36.24592404434198 38.0 35.0 40.0 30.0 41.0 35 36.18400817261897 38.0 35.0 40.0 30.0 41.0 36 36.09392040669823 38.0 35.0 40.0 30.0 41.0 37 36.039206482874775 38.0 35.0 40.0 30.0 41.0 38 35.96698682993498 38.0 35.0 40.0 29.0 41.0 39 35.93716781479078 38.0 35.0 40.0 29.0 41.0 40 35.79110899816392 38.0 34.0 40.0 29.0 41.0 41 35.66295884699808 38.0 34.0 40.0 28.0 41.0 42 35.560537087400085 38.0 34.0 40.0 28.0 41.0 43 35.49819757168298 38.0 34.0 40.0 28.0 41.0 44 35.37416824274887 38.0 34.0 40.0 28.0 41.0 45 35.29336095503679 38.0 34.0 40.0 27.0 41.0 46 35.18766738683269 37.0 34.0 40.0 27.0 41.0 47 35.05949393956127 37.0 34.0 40.0 27.0 41.0 48 34.98625788616315 37.0 34.0 40.0 26.0 41.0 49 34.962516566119525 37.0 34.0 40.0 27.0 41.0 50 34.8427055579331 37.0 34.0 40.0 26.0 41.0 51 33.35635621298508 35.0 31.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 7.0 10 8.0 11 3.0 12 10.0 13 12.0 14 29.0 15 62.0 16 138.0 17 243.0 18 477.0 19 832.0 20 1419.0 21 2182.0 22 3405.0 23 4868.0 24 6482.0 25 8508.0 26 10871.0 27 13514.0 28 16941.0 29 21082.0 30 26163.0 31 33149.0 32 42198.0 33 56692.0 34 90428.0 35 104431.0 36 105902.0 37 145976.0 38 216739.0 39 246181.0 40 36.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.990029266811156 20.522833634744675 25.814328312878775 10.672808785565389 2 30.486232864420117 23.645547165122796 26.564721758217484 19.3034982122396 3 31.97071248119055 24.87609923105595 26.241509863743666 16.91167842400983 4 28.581991937821833 26.532970029128762 25.859626295953724 19.02541173709568 5 25.843319022046746 30.18165785441142 23.799215180087526 20.175807943454313 6 27.299411902756876 35.606026616232036 22.386694645001864 14.707866836009224 7 82.18857420931293 6.043441197178238 7.208073912503278 4.559910681005563 8 83.0192960779712 4.751974129243342 7.066916769054489 5.161813023730966 9 77.68500559106533 6.958546737164709 9.30800212598534 6.048445545784613 10 43.918163369548715 25.033649930284245 15.945148887999228 15.103037812167816 11 33.100055910653396 25.71277454891837 21.162182310145365 20.024987230282868 12 29.81426964120546 22.946405152063175 27.449628642820656 19.78969656391071 13 25.776105443350772 24.344861741927467 28.60640970774604 21.272623106975715 14 20.70808081505308 28.47077460413877 27.707870287284127 23.11327429352403 15 20.375119068984084 25.850566699338735 32.50824854701327 21.266065684663914 16 22.620432237668595 25.094047241050845 30.107369162168506 22.178151359112057 17 22.898346149067468 24.81535679279926 26.848157709457876 25.4381393486754 18 24.167552493891243 24.61820271408258 28.607445090216327 22.606799701809848 19 25.09421980479589 27.368264837030797 25.218293137484988 22.319222220688324 20 27.74402239187156 26.161957977276806 25.189216146444497 20.90480348440714 21 25.450218810828716 26.966622720432927 26.26713557988321 21.316022888855144 22 23.37168850173254 25.67412027002775 25.023382387453925 25.930808840785787 23 23.72958570896089 26.604411419578394 26.00017946629485 23.665823405165867 24 24.09757789527451 24.500341676215193 26.591382856827313 24.81069757168298 25 22.751666965777158 26.251432279083893 25.323988431326534 25.67291232381242 26 22.486781617129367 28.54238855833345 25.746079351712524 23.224750472824663 27 23.435019396164943 28.31037660311719 25.269113160401453 22.985490840316412 28 20.600487320016015 28.359125861093087 26.35212322431906 24.688263594571836 29 23.211031655093393 26.816319698496628 25.073425873517678 24.89922277289231 30 23.734762621312314 26.544100390684317 24.635200242969756 25.085936745033617 31 25.192408575727875 27.921159076162734 22.193336968676228 24.693095379433164 32 24.677392078633847 28.949035023537697 22.42077598464873 23.95279691317973 33 24.265913828568273 27.17922125433135 23.092825489735908 25.46203942736447 34 22.49221737509836 26.756785206455262 25.304575010008694 25.446422408437673 35 21.43500559106534 28.67224277648163 23.953228322542348 25.939523309910683 36 22.73009649764623 30.092442398221902 24.215784060631997 22.96167704349987 37 24.112677222966163 28.747221723704737 24.1619441721772 22.978156881151897 38 22.46866242389939 28.529014868092272 23.62475323384458 25.377569474163757 39 23.91241699683863 24.10586095503679 25.080846114554717 26.90087593356986 40 23.396278835401798 24.938222179273023 26.576283529135665 25.089215456189518 41 20.71645015668788 27.50778262490164 25.43649999309745 26.33926722531303 42 22.548559437856344 26.28534105498571 26.23417590457915 24.93192360257879 43 23.642182172094373 24.99439167828596 26.604583983323437 24.75884216629623 44 23.326304236785067 24.860395930256637 25.122865386473762 26.690434446484527 45 22.57030246973232 24.37402501484048 24.880758452172234 28.17491406325497 46 22.60360727252647 25.996555627648853 25.10215773706807 26.297679362756604 47 20.973483854936013 26.361355384679104 27.738672915775087 24.9264878446098 48 21.627414166793212 24.617081049739774 27.52892168366995 26.22658309979706 49 22.656929469746125 23.536486878252827 28.67819622568577 25.128387426315278 50 20.70454325827961 24.057111697060897 27.280171045184094 27.958173999475406 51 20.50997763573864 23.934764001822273 25.280070958211965 30.275187404227122 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 405.0 1 769.0 2 1133.0 3 1409.5 4 1686.0 5 1401.0 6 1116.0 7 1151.0 8 1186.0 9 1294.0 10 1402.0 11 1455.5 12 1509.0 13 1660.0 14 1811.0 15 2023.0 16 2235.0 17 2337.0 18 2439.0 19 2819.5 20 3200.0 21 3482.5 22 3765.0 23 3959.5 24 4154.0 25 5069.0 26 7247.0 27 8510.0 28 9784.0 29 11058.0 30 13612.5 31 16167.0 32 17817.5 33 19468.0 34 21378.5 35 23289.0 36 26447.0 37 29605.0 38 32831.0 39 36057.0 40 41590.5 41 47124.0 42 52031.5 43 56939.0 44 61118.0 45 65297.0 46 76852.0 47 88407.0 48 99941.0 49 111475.0 50 110767.5 51 110060.0 52 98037.5 53 86015.0 54 78133.5 55 70252.0 56 66881.5 57 63511.0 58 62045.0 59 60579.0 60 58260.0 61 55941.0 62 52201.5 63 48462.0 64 41297.5 65 34133.0 66 30245.5 67 26358.0 68 22594.0 69 18830.0 70 16072.0 71 13314.0 72 11284.5 73 9255.0 74 7818.5 75 5176.5 76 3971.0 77 3467.5 78 2964.0 79 2460.0 80 1956.0 81 1324.5 82 693.0 83 544.0 84 395.0 85 352.0 86 309.0 87 214.0 88 119.0 89 79.0 90 39.0 91 28.0 92 17.0 93 14.5 94 12.0 95 7.5 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1158992.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.2418911644756 #Duplication Level Percentage of deduplicated Percentage of total 1 69.06074824729292 16.05102394500831 2 12.49269484715706 5.807077079772591 3 5.057578610578068 3.5264307486850557 4 2.591379092201322 2.409142033073628 5 1.5106385497612713 1.7555048381206366 6 0.9558123878568593 1.3328932495335999 7 0.7022311301067269 1.1424825648773076 8 0.5070032871748161 0.9426972176438756 9 0.3756944296825793 0.7858664141204017 >10 4.674316701465699 28.701155569011664 >50 1.9179602071049973 30.06900737693264 >100 0.14650567340436865 5.316833624267835 >500 0.005205785349393458 0.7705480826704687 >1k 0.0022310508640257676 1.389337256282016 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGC 4387 0.3785185747615169 No Hit CTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGCT 3662 0.31596421718182693 No Hit CCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGC 3300 0.28473017932824385 No Hit TCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGC 2229 0.19232229385535016 No Hit ACTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGC 1442 0.12441846017919019 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3361541753523752 0.0 2 0.0 0.0 0.0 1.3830984165550755 0.0 3 0.0 0.0 0.0 1.8756816267929373 0.0 4 0.0 0.0 0.0 2.4256422822590666 0.0 5 0.0 0.0 0.0 3.8526581719287103 0.0 6 0.0 0.0 0.0 4.580877176028825 0.0 7 0.0 0.0 0.0 5.4046964948852105 0.0 8 0.0 0.0 0.0 6.73671604290625 0.0 9 0.0 0.0 0.0 7.169419633612656 0.0 10 0.0 0.0 0.0 8.351222441569917 0.0 11 0.0 0.0 0.0 10.125091458784874 0.0 12 0.0 0.0 0.0 11.376868865358864 0.0 13 0.0 0.0 0.0 11.865310545715587 0.0 14 0.0 0.0 0.0 12.05840937642365 0.0 15 0.0 0.0 0.0 12.448403440230821 0.0 16 0.0 0.0 0.0 13.26462995430512 0.0 17 8.628187252371026E-5 0.0 0.0 14.242462415616329 0.0 18 8.628187252371026E-5 0.0 0.0 15.339622706627829 0.0 19 1.7256374504742052E-4 0.0 0.0 15.941179921863137 0.0 20 2.588456175711308E-4 0.0 0.0 16.493901597250023 0.0 21 4.314093626185513E-4 0.0 0.0 17.22652097684885 0.0 22 7.765368527133923E-4 0.0 0.0 17.98347184449936 0.0 23 0.0012942280878556539 0.0 0.0 18.715228405372944 0.0 24 0.0017256374504742052 0.0 0.0 19.302894239131934 0.0 25 0.003968966136090672 0.0 0.0 19.821793420489527 0.0 26 0.004227811753661803 0.0 0.0 20.283401438491378 0.0 27 0.004572939243756644 0.0 0.0 20.743715228405375 0.0 28 0.004572939243756644 0.0 0.0 21.204891837044606 0.0 29 0.004572939243756644 0.0 0.0 21.701444013418556 0.0 30 0.004572939243756644 0.0 0.0 22.225692670872622 0.0 31 0.004572939243756644 0.0 0.0 22.740450322349076 0.0 32 0.005004348606375195 0.0 0.0 23.22492303656971 0.0 33 0.0051769123514226155 0.0 0.0 23.69636718803926 0.0 34 0.005349476096470036 0.0 0.0 24.178941701064375 8.628187252371026E-5 35 0.005349476096470036 0.0 0.0 24.68722821210155 8.628187252371026E-5 36 0.005349476096470036 0.0 0.0 25.175238483095654 8.628187252371026E-5 37 0.005522039841517457 0.0 0.0 25.66247221723705 1.7256374504742052E-4 38 0.005522039841517457 0.0 0.0 26.15695362867043 1.7256374504742052E-4 39 0.005608321714041167 0.0 0.0 26.669467951461268 1.7256374504742052E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTACGG 50 2.1827873E-11 45.0 2 TCCGATC 20 7.033312E-4 45.0 15 ACCGAGT 20 7.033312E-4 45.0 17 CGTTACG 25 3.8908256E-5 45.0 20 TACGCGC 20 7.033312E-4 45.0 13 TCCACGT 25 3.8908256E-5 45.0 23 CGAATCC 20 7.033312E-4 45.0 44 CGTCGCA 20 7.033312E-4 45.0 32 ACCCGTT 20 7.033312E-4 45.0 42 CCAACCG 20 7.033312E-4 45.0 2 GTAACGT 20 7.033312E-4 45.0 9 ATACCCG 20 7.033312E-4 45.0 26 CGATCAA 65 0.0 41.53846 10 CGACAAT 40 3.4582627E-7 39.375 20 TATACGG 80 0.0 39.375 2 ACGCGAT 35 6.248334E-6 38.571426 12 TACGACG 35 6.248334E-6 38.571426 1 TTACGCG 70 0.0 38.571426 1 CGTAAGG 150 0.0 37.500004 2 CGAGTTA 30 1.1399279E-4 37.499996 40 >>END_MODULE