SRR3552815_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552815_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	912857
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	5122	0.5610955494672222	No Hit
GCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	4811	0.5270266865456474	No Hit
CTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGCT	4111	0.4503443584263472	TruSeq Adapter, Index 21 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	2268	0.24845074310653256	No Hit
ACTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	1480	0.16212835088080607	TruSeq Adapter, Index 21 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCC	1094	0.11984352423216342	No Hit
GCCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTG	996	0.1091079982954614	No Hit
CGCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTG	983	0.10768389791610297	TruSeq Adapter, Index 21 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCCGT	30	2.1650085E-6	45.000004	9
GTCGTAG	30	2.1650085E-6	45.000004	1
ACTCGAT	30	2.1650085E-6	45.000004	16
TGTACCG	30	2.1650085E-6	45.000004	1
AATCACG	20	7.032523E-4	45.0	11
ACGTTAG	20	7.032523E-4	45.0	1
GACACGC	20	7.032523E-4	45.0	11
CACGATC	20	7.032523E-4	45.0	16
ATATGCG	25	3.8901722E-5	45.0	1
ACGATTG	20	7.032523E-4	45.0	1
TCAGCGA	20	7.032523E-4	45.0	39
CTCGATC	50	2.1827873E-11	45.0	16
ATAACGG	20	7.032523E-4	45.0	2
GACGAAT	20	7.032523E-4	45.0	9
CGATCTC	25	3.8901722E-5	45.0	10
TAAGACG	40	6.8121153E-9	45.0	1
CCGTTCA	20	7.032523E-4	45.0	14
CGTTAGG	120	0.0	43.125004	2
AGTACGG	75	0.0	42.0	2
GCCGATA	70	0.0	41.785717	9