SRR3552814_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552814_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	363668
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	3027	0.8323525853250767	No Hit
CTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGCT	1619	0.44518626879461487	TruSeq Adapter, Index 21 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	1585	0.4358370821738509	No Hit
TCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	664	0.18258411518197917	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	505	0.13886291892605343	No Hit
ACTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	462	0.1270389476115578	TruSeq Adapter, Index 21 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCC	426	0.1171398088366312	No Hit
CGCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTG	408	0.11219023944916792	TruSeq Adapter, Index 21 (95% over 21bp)
GCCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTG	404	0.11109033514084274	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAAAT	20	7.026921E-4	45.0	35
CTCACTA	25	3.8855283E-5	45.0	45
ATTAGCG	25	3.8855283E-5	45.0	1
TACCAGT	20	7.026921E-4	45.0	16
TTGTCGG	25	3.8855283E-5	45.0	1
GTCTCCC	20	7.026921E-4	45.0	30
GCCGGAC	20	7.026921E-4	45.0	19
CTGACCG	20	7.026921E-4	45.0	20
AGACGCG	20	7.026921E-4	45.0	20
CGGATGA	20	7.026921E-4	45.0	32
AATCTAC	20	7.026921E-4	45.0	44
CGTAAGG	35	1.208864E-7	45.0	2
ACGTATG	20	7.026921E-4	45.0	1
GGTTACG	25	3.8855283E-5	45.0	1
TACGTAG	25	3.8855283E-5	45.0	1
GATCGAG	30	2.1613941E-6	44.999996	1
GTTTCAA	30	2.1613941E-6	44.999996	23
GCGAATG	30	2.1613941E-6	44.999996	1
CGGGATC	30	2.1613941E-6	44.999996	6
GCGATCT	30	2.1613941E-6	44.999996	9