SRR3552804_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552804_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	449877
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGCT	1361	0.302527135194731	TruSeq Adapter, Index 13 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC	1305	0.29007928833881264	TruSeq Adapter, Index 16 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC	1289	0.28652276066569304	TruSeq Adapter, Index 16 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC	634	0.1409274090473618	TruSeq Adapter, Index 16 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAG	20	7.0287037E-4	45.0	1
AGCGTTG	25	3.887008E-5	45.0	1
ACTGCGG	35	1.2097189E-7	45.0	2
TAGCGCG	20	7.0287037E-4	45.0	1
TCGATAG	20	7.0287037E-4	45.0	1
AGTTGCG	40	6.7993824E-9	45.0	1
CGAATAT	25	3.887008E-5	45.0	14
CTACCGG	20	7.0287037E-4	45.0	2
GCGATAC	20	7.0287037E-4	45.0	9
CTCTCGA	20	7.0287037E-4	45.0	11
AAGGCGA	20	7.0287037E-4	45.0	5
TAATCGG	20	7.0287037E-4	45.0	2
CGCACGG	30	2.1625456E-6	44.999996	2
CGCATGG	55	6.002665E-11	40.909092	2
TACGGGA	155	0.0	40.64516	4
CGACAGG	45	1.9237632E-8	40.000004	2
ACAACGG	40	3.451969E-7	39.375	2
ACGTTGG	40	3.451969E-7	39.375	2
CGTGCGG	65	9.094947E-12	38.07692	2
AAGGGCG	185	0.0	37.7027	5