SRR3552803_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552803_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	988457
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGC	5791	0.5858626121318378	RNA PCR Primer, Index 36 (96% over 25bp)
GCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGC	5271	0.5332553666977926	RNA PCR Primer, Index 15 (96% over 25bp)
CTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGCT	4442	0.44938727734236295	RNA PCR Primer, Index 36 (96% over 26bp)
TCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGC	2144	0.21690371963575553	RNA PCR Primer, Index 15 (96% over 25bp)
ACTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGC	1384	0.14001620707830487	RNA PCR Primer, Index 15 (96% over 25bp)
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1013	0.10248296081670726	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTGACG	85	0.0	45.000004	1
ATCCGGC	30	2.1651922E-6	45.000004	12
CGTGTCG	30	2.1651922E-6	45.000004	39
AGTTACG	30	2.1651922E-6	45.000004	1
TTATTCG	30	2.1651922E-6	45.000004	27
ACGAACG	30	2.1651922E-6	45.000004	1
ACGCGAA	20	7.0328073E-4	45.0	43
CGTATCG	20	7.0328073E-4	45.0	40
GCGAATG	50	2.1827873E-11	45.0	1
GAATCGC	20	7.0328073E-4	45.0	37
TTATCCG	40	6.8139343E-9	45.0	1
CTGCGAC	20	7.0328073E-4	45.0	13
TCTACCG	20	7.0328073E-4	45.0	38
GTATACG	20	7.0328073E-4	45.0	1
ATGCGAG	25	3.8904087E-5	45.0	1
CCGCGAT	20	7.0328073E-4	45.0	26
CGGTAAT	20	7.0328073E-4	45.0	6
TGTCGTA	20	7.0328073E-4	45.0	37
TATCGGC	25	3.8904087E-5	45.0	15
AGTACGG	45	3.8380676E-10	45.0	2