SRR3552802_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552802_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	618896
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGC	4905	0.7925402652465035	RNA PCR Primer, Index 36 (96% over 25bp)
CTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGCT	3108	0.5021845350430444	RNA PCR Primer, Index 36 (96% over 26bp)
GCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGC	3107	0.5020229570073163	RNA PCR Primer, Index 15 (96% over 25bp)
TCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGC	1270	0.2052041053747318	RNA PCR Primer, Index 15 (96% over 25bp)
ACTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTGC	848	0.13701817429745872	RNA PCR Primer, Index 15 (96% over 25bp)
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	719	0.11617460768852926	No Hit
GCCTGTCTCTTATACACATCTGACGCGGACAATCTCGTATGCCGTCTTCTG	707	0.11423567125979162	RNA PCR Primer, Index 15 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTCGT	20	7.03076E-4	45.0	29
GATACCG	20	7.03076E-4	45.0	1
GCGAATG	20	7.03076E-4	45.0	1
CCTCGAA	25	3.8887112E-5	45.0	23
TCGTCGG	20	7.03076E-4	45.0	10
AGTTACC	20	7.03076E-4	45.0	17
TGTAGCG	50	2.1827873E-11	45.0	1
ACATAAC	20	7.03076E-4	45.0	10
GTGGTCG	20	7.03076E-4	45.0	13
CTAGGTA	25	3.8887112E-5	45.0	27
TTCGACA	25	3.8887112E-5	45.0	19
AGTACGG	30	2.1638716E-6	44.999996	2
GCTACGA	100	0.0	42.75	10
TCGTTCG	60	3.6379788E-12	41.249996	45
TACGAAT	100	0.0	40.5	12
GGTATTA	50	1.0804797E-9	40.5	8
CGAATAT	100	0.0	40.5	14
GGCCGAT	90	0.0	40.0	8
ACGTTAG	40	3.4547702E-7	39.375	1
CGTACAC	40	3.4547702E-7	39.375	25