Basic Statistics
Measure | Value |
---|---|
Filename | SRR3552798_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 697472 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTGC | 5918 | 0.8484928427234355 | Illumina PCR Primer Index 10 (95% over 23bp) |
GCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTGC | 3568 | 0.5115617544503579 | Illumina PCR Primer Index 10 (95% over 23bp) |
CTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTGCT | 3536 | 0.5069737566525968 | Illumina PCR Primer Index 10 (95% over 24bp) |
TCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTGC | 1702 | 0.2440241328684162 | Illumina PCR Primer Index 10 (95% over 23bp) |
ACTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTGC | 1052 | 0.15083042760139476 | Illumina PCR Primer Index 10 (95% over 23bp) |
GCCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTG | 876 | 0.12559643971370893 | Illumina PCR Primer Index 10 (95% over 22bp) |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCC | 800 | 0.11469994494402642 | No Hit |
CGCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTG | 781 | 0.1119758212516058 | Illumina PCR Primer Index 10 (95% over 22bp) |
ACCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTG | 758 | 0.10867819783446503 | Illumina PCR Primer Index 10 (95% over 22bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACGAG | 55 | 1.8189894E-12 | 45.000004 | 1 |
TCGTTGA | 35 | 1.2110104E-7 | 45.0 | 24 |
CAACGCG | 20 | 7.0313766E-4 | 45.0 | 1 |
CGGCATC | 20 | 7.0313766E-4 | 45.0 | 22 |
TTCACCG | 20 | 7.0313766E-4 | 45.0 | 23 |
TCGACGT | 20 | 7.0313766E-4 | 45.0 | 26 |
CGATAGA | 20 | 7.0313766E-4 | 45.0 | 10 |
TATTGCG | 25 | 3.8892238E-5 | 44.999996 | 1 |
TATAGCG | 25 | 3.8892238E-5 | 44.999996 | 1 |
ACGAGAC | 25 | 3.8892238E-5 | 44.999996 | 12 |
CGTAAGG | 150 | 0.0 | 43.500004 | 2 |
CGAAAGG | 105 | 0.0 | 42.857143 | 2 |
GCGTAAG | 90 | 0.0 | 42.5 | 1 |
AATGGGT | 75 | 0.0 | 42.000004 | 4 |
TGTAGCG | 70 | 0.0 | 41.785713 | 1 |
CACGACC | 115 | 0.0 | 41.086956 | 27 |
CGAGGGT | 55 | 6.002665E-11 | 40.909092 | 4 |
CGAATAT | 50 | 1.0804797E-9 | 40.499996 | 14 |
CGTCAGG | 50 | 1.0804797E-9 | 40.499996 | 2 |
GCGAAAG | 95 | 0.0 | 40.26316 | 1 |