SRR3552797_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552797_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	924189
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTGCCGATTTCGTATGCCGTCTTCTGC	5211	0.5638457068846308	Illumina Paired End PCR Primer 2 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCTGCCGATTTCGTATGCCGTCTTCTGC	4357	0.47144036555293345	Illumina Paired End PCR Primer 2 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCTGCCGATTTCGTATGCCGTCTTCTGCT	4157	0.4497997703932854	TruSeq Adapter, Index 1 (95% over 24bp)
TCTGTCTCTTATACACATCTGACGCTGCCGATTTCGTATGCCGTCTTCTGC	2805	0.30350934711406435	Illumina Paired End PCR Primer 2 (95% over 24bp)
ACTGTCTCTTATACACATCTGACGCTGCCGATTTCGTATGCCGTCTTCTGC	1668	0.180482563631465	TruSeq Adapter, Index 1 (95% over 23bp)
GCCTGTCTCTTATACACATCTGACGCTGCCGATTTCGTATGCCGTCTTCTG	1151	0.1245416251437747	Illumina Paired End PCR Primer 2 (95% over 23bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCCGATTTCGTATGCC	1024	0.11079984721739818	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTCACG	35	1.2115743E-7	45.000004	1
TGCGATT	35	1.2115743E-7	45.000004	27
GCTACGA	35	1.2115743E-7	45.000004	10
ATACCGG	30	2.1650376E-6	45.000004	1
CTATCGA	20	7.032569E-4	45.0	27
GCTATCG	25	3.890211E-5	45.0	26
ACCGAAC	20	7.032569E-4	45.0	35
TTCGTTA	25	3.890211E-5	45.0	13
CCTCGAT	45	3.8380676E-10	45.0	15
ACCTCGT	20	7.032569E-4	45.0	45
CGTTAAC	25	3.890211E-5	45.0	15
CCGTATT	20	7.032569E-4	45.0	16
AATGCGC	50	2.1827873E-11	45.0	8
AATGCGA	20	7.032569E-4	45.0	13
TACGCGG	50	2.1827873E-11	45.0	2
CCGTAAC	20	7.032569E-4	45.0	30
CGCTAGC	20	7.032569E-4	45.0	22
AACTCGC	25	3.890211E-5	45.0	39
ATAGTCG	25	3.890211E-5	45.0	11
CACGTAA	25	3.890211E-5	45.0	43