SRR3552795_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552795_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1777639
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGC	8454	0.47557462454412847	TruSeq Adapter, Index 13 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGC	7875	0.4430033319476002	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGCT	7794	0.4384467262475677	TruSeq Adapter, Index 16 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGC	4187	0.23553713661772724	TruSeq Adapter, Index 13 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGC	2557	0.1438424787034938	TruSeq Adapter, Index 16 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCC	2125	0.11954058163665401	No Hit
CGCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTG	1787	0.10052659735750621	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATCG	20	7.034329E-4	45.0	1
TCCAACG	20	7.034329E-4	45.0	38
GTATACG	20	7.034329E-4	45.0	1
TACGTAA	20	7.034329E-4	45.0	1
CTTACCG	25	3.8916696E-5	45.0	1
TTAACGG	150	0.0	42.000004	2
TCGACGT	65	0.0	41.538464	26
TACGCAT	60	3.6379788E-12	41.249996	16
CGCATCG	55	6.184564E-11	40.909092	10
TAACGCG	80	0.0	39.375	1
TGCGACG	40	3.459645E-7	39.375	1
TAGTACG	120	0.0	39.374996	1
CGCGTTC	35	6.2502168E-6	38.571426	9
GCCGTAA	35	6.2502168E-6	38.571426	17
GCTACGA	265	0.0	38.207546	10
CTACGAA	255	0.0	37.941174	11
TACGAAT	250	0.0	37.8	12
TTCGTAG	90	0.0	37.5	1
TCTACGG	90	0.0	37.5	2
ACGTACG	90	0.0	37.5	1