SRR3552794_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552794_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	757685
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGC	4453	0.5877112520374562	TruSeq Adapter, Index 13 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGC	3539	0.4670806469707068	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGCT	3385	0.44675557784567466	TruSeq Adapter, Index 16 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGC	1518	0.2003471099467457	TruSeq Adapter, Index 13 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGC	963	0.12709767251562323	TruSeq Adapter, Index 16 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	880	0.11614325214304097	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCC	877	0.11574730923800788	No Hit
CGCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTG	768	0.10136138368847213	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATG	40	6.8102963E-9	45.000004	1
ATAGCCG	20	7.031762E-4	45.000004	1
CGTAGCG	20	7.031762E-4	45.000004	2
TATACGG	20	7.031762E-4	45.000004	2
GCGCTAG	20	7.031762E-4	45.000004	1
ATCGAGC	20	7.031762E-4	45.000004	32
TGCGTAG	40	6.8102963E-9	45.000004	1
AACTGCG	25	3.889542E-5	45.0	1
ACGTACG	25	3.889542E-5	45.0	1
CGCATGG	65	0.0	41.53846	2
TTTGACG	60	3.6379788E-12	41.250004	1
TTAACGG	50	1.0804797E-9	40.5	2
AACACGT	150	0.0	40.5	41
CGACCAA	170	0.0	39.705883	29
TATTGCG	40	3.4561344E-7	39.375004	1
TCATACG	40	3.4561344E-7	39.375004	1
GACACGA	180	0.0	38.75	25
TTAGGCG	70	0.0	38.57143	1
GCGATTA	105	0.0	38.57143	9
ACCGTTG	35	6.245469E-6	38.57143	1