##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552792_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1831661 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.350374878320824 33.0 33.0 33.0 27.0 33.0 2 31.561398643089525 33.0 33.0 33.0 27.0 33.0 3 31.642403807254727 33.0 33.0 33.0 27.0 33.0 4 31.555752947734323 33.0 33.0 33.0 27.0 33.0 5 31.646863147711287 33.0 33.0 33.0 27.0 33.0 6 35.06182148334217 37.0 37.0 37.0 27.0 37.0 7 35.48391705670427 37.0 37.0 37.0 33.0 37.0 8 35.58917998472425 37.0 37.0 37.0 33.0 37.0 9 35.460894237525395 37.0 37.0 37.0 33.0 37.0 10 35.4347966135655 37.0 37.0 37.0 33.0 37.0 11 35.43421681195374 37.0 37.0 37.0 33.0 37.0 12 35.464130098309674 37.0 37.0 37.0 33.0 37.0 13 35.533680631951 37.0 37.0 37.0 33.0 37.0 14 35.580157572825975 37.0 37.0 37.0 33.0 37.0 15 35.605846824275886 37.0 37.0 37.0 33.0 37.0 16 35.61466614182428 37.0 37.0 37.0 33.0 37.0 17 35.617709827309746 37.0 37.0 37.0 33.0 37.0 18 35.612283604881036 37.0 37.0 37.0 33.0 37.0 19 35.6074956009873 37.0 37.0 37.0 33.0 37.0 20 35.590423664641 37.0 37.0 37.0 33.0 37.0 21 35.51236991997973 37.0 37.0 37.0 33.0 37.0 22 35.54593508296568 37.0 37.0 37.0 33.0 37.0 23 35.55687542618421 37.0 37.0 37.0 33.0 37.0 24 35.55910291260228 37.0 37.0 37.0 33.0 37.0 25 35.54626920592839 37.0 37.0 37.0 33.0 37.0 26 35.492670859946244 37.0 37.0 37.0 33.0 37.0 27 35.487634447640694 37.0 37.0 37.0 33.0 37.0 28 35.47064767989273 37.0 37.0 37.0 33.0 37.0 29 35.47239691187398 37.0 37.0 37.0 33.0 37.0 30 35.46184037330052 37.0 37.0 37.0 33.0 37.0 31 35.45055717187842 37.0 37.0 37.0 33.0 37.0 32 35.432129089389356 37.0 37.0 37.0 33.0 37.0 33 35.41929374485781 37.0 37.0 37.0 33.0 37.0 34 35.37648287537923 37.0 37.0 37.0 33.0 37.0 35 35.35678108558297 37.0 37.0 37.0 33.0 37.0 36 35.35962386052878 37.0 37.0 37.0 33.0 37.0 37 35.353594360528504 37.0 37.0 37.0 33.0 37.0 38 35.34056574879303 37.0 37.0 37.0 33.0 37.0 39 35.34503928401598 37.0 37.0 37.0 33.0 37.0 40 35.33556755316622 37.0 37.0 37.0 33.0 37.0 41 35.3124655708671 37.0 37.0 37.0 33.0 37.0 42 35.30039455991037 37.0 37.0 37.0 33.0 37.0 43 35.29338944269709 37.0 37.0 37.0 33.0 37.0 44 35.23822803455443 37.0 37.0 37.0 33.0 37.0 45 35.21538537971819 37.0 37.0 37.0 33.0 37.0 46 35.22830698475318 37.0 37.0 37.0 33.0 37.0 47 35.21247599856087 37.0 37.0 37.0 33.0 37.0 48 35.20556642304444 37.0 37.0 37.0 33.0 37.0 49 35.19327320939846 37.0 37.0 37.0 33.0 37.0 50 35.18057981253081 37.0 37.0 37.0 33.0 37.0 51 34.77075834447532 37.0 37.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1172.0 15 4732.0 16 4566.0 17 3794.0 18 3660.0 19 3810.0 20 3904.0 21 4314.0 22 4979.0 23 6025.0 24 7467.0 25 9634.0 26 12935.0 27 16875.0 28 21542.0 29 26186.0 30 31901.0 31 38896.0 32 49778.0 33 67987.0 34 102766.0 35 211560.0 36 1193178.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.6031012288846 19.678859789011177 24.798147692176663 11.919891289927557 2 30.516072570197217 23.164439271240695 26.41029098725146 19.90919717131063 3 32.32939938121738 24.207863791389343 26.13715092476173 17.325585902631545 4 28.761872420715406 26.670819545756558 25.50815898793499 19.059149045593042 5 25.07030504007019 30.996674602996954 25.019804428876302 18.913215928056555 6 26.775205673975698 35.55106539911043 22.94829665533087 14.725432271583006 7 81.86438429381856 5.85501356419119 7.509850348945575 4.770751793044674 8 82.98598921962088 4.581797614296532 6.876927553734015 5.555285612348573 9 77.35568972642864 7.552926005412573 9.471676254503427 5.619708013655365 10 37.86333824872616 33.05742711123947 16.39708439498357 12.682150245050803 11 24.71297909383887 26.667489235180525 28.804620505650334 19.814911165330265 12 23.95470559235579 23.591155787015175 32.435969319650304 20.01816930097873 13 23.678235219290034 24.92508166085318 33.09193131261735 18.304751807239438 14 20.6738037224137 28.04793026657225 29.871029628299123 21.407236382714924 15 19.11570973013019 27.668602432437005 33.626473457697685 19.589214379735115 16 21.370821347399982 26.447197379864505 31.075073389672 21.106907883063514 17 21.612569138066487 26.30432159662732 29.21097299118123 22.87213627412496 18 21.54405209260884 25.65245424781114 31.77891542157637 21.024578238003645 19 21.8677473615478 27.614498534390368 29.88183948885738 20.635914615204452 20 23.19796075802236 27.18952906678692 30.324224842915804 19.288285332274913 21 22.670079234094082 28.040669097611403 30.15863743345521 19.130614234839307 22 20.31702372873583 26.228379596442792 28.97599501217747 24.478601662643907 23 19.840843911619015 27.818466408358315 28.94902495603717 23.391664723985496 24 21.309456280392496 26.15625926413239 29.481219505137684 23.053064950337426 25 19.007611124547612 29.20589563243417 27.56705525749579 24.21943798552243 26 19.319295437310725 29.458617069424964 29.075030805372826 22.14705668789148 27 20.492656665179858 28.026474331221774 29.15140956760012 22.329459435998256 28 18.150411020379863 28.9311177122841 30.05900109245106 22.859470174884983 29 20.73085576424895 26.65334906404624 29.178434218995765 23.437360952709042 30 21.243778188212776 26.668854116564145 28.96802410489714 23.11934359032594 31 20.296113745938797 30.018218436708537 25.461807616147308 24.223860201205355 32 21.198518721531986 30.82912176434395 25.65310939087528 22.31925012324879 33 21.573915697282413 27.3874368674116 26.606833906492522 24.431813528813464 34 19.494655397478027 28.328549879044214 27.591950693932993 24.58484402954477 35 20.032964615177153 28.105528260960956 26.51058247131975 25.350924652542144 36 20.65087371516891 29.019452835431885 26.686870550827912 23.642802898571297 37 20.508653074995863 29.124876273502576 27.24019346374684 23.12627718775472 38 21.253332357898106 29.752721709967073 26.456478573273113 22.53746735886171 39 23.208825213835965 24.737110196701245 29.111718816964494 22.942345772498296 40 21.18383259784425 25.303645161413602 29.39244761994714 24.120074620795005 41 19.54046081671226 28.461052563765893 26.063720306323056 25.934766313198786 42 21.970386441595906 28.038103120610202 26.16985348271323 23.821656955080662 43 22.731826467888983 25.983028518923533 27.761414366523063 23.52373064666442 44 20.844359300110664 26.445777903225544 27.749403410347224 24.960459386316572 45 21.60765556508546 24.393924421604215 28.01102387395921 25.987396139351116 46 21.617264330026135 26.3102724794599 28.27739412478619 23.795069065727777 47 18.83918476180909 27.134770025676147 29.654231869325166 24.371813343189597 48 19.80715863907131 26.283138637553566 28.84922482926699 25.060477894108136 49 22.5852928025437 24.13994729374049 29.906243567996484 23.368516335719328 50 21.003231493163852 23.393520962667218 29.000453686571916 26.602793857597014 51 19.545811151736046 23.243056438937117 26.70996434383873 30.5011680654881 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 461.0 1 541.5 2 622.0 3 1904.5 4 3187.0 5 2536.5 6 1886.0 7 1869.5 8 1853.0 9 2007.0 10 2161.0 11 2353.5 12 2546.0 13 2670.5 14 2795.0 15 2969.0 16 3143.0 17 3394.5 18 3646.0 19 4135.0 20 4624.0 21 4841.0 22 5058.0 23 6481.5 24 7905.0 25 10086.0 26 13525.5 27 14784.0 28 18304.5 29 21825.0 30 25635.0 31 29445.0 32 34427.0 33 39409.0 34 45561.5 35 51714.0 36 57512.0 37 63310.0 38 68494.0 39 73678.0 40 80678.5 41 87679.0 42 97608.0 43 107537.0 44 121674.5 45 135812.0 46 155984.0 47 176156.0 48 206066.5 49 235977.0 50 230800.0 51 225623.0 52 191956.0 53 158289.0 54 132262.0 55 106235.0 56 89544.0 57 72853.0 58 63994.5 59 55136.0 60 49956.0 61 44776.0 62 39185.5 63 33595.0 64 26808.0 65 20021.0 66 15444.0 67 10867.0 68 8912.5 69 6958.0 70 5116.5 71 3275.0 72 2518.5 73 1762.0 74 1525.5 75 953.5 76 618.0 77 511.5 78 405.0 79 345.0 80 285.0 81 197.0 82 109.0 83 79.5 84 50.0 85 38.5 86 27.0 87 17.5 88 8.0 89 4.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1831661.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.202209674704616 #Duplication Level Percentage of deduplicated Percentage of total 1 66.92433327217451 18.874140792816757 2 12.905509915625151 7.2792779319887995 3 5.834002378960263 4.935952750024885 4 3.160265301854217 3.5650585868234517 5 1.9241777168342018 2.7133031710776283 6 1.2064809207162515 2.041525673674224 7 0.8669571885659394 1.7115075887650333 8 0.6637080445620611 1.4974426748421952 9 0.46514374413459336 1.180627326086486 >10 5.243434677152963 35.79652345870962 >50 0.7208973445950337 12.805330731406864 >100 0.07669766863344789 3.8906110205306788 >500 0.005659603710529221 1.021965627964438 >1k 0.002146746235028325 1.151252425685704 >5k 3.9031749727787735E-4 0.9748521759212693 >10k+ 1.9515874863893867E-4 0.5606280636819133 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC 10186 0.5561072709415116 No Hit GCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC 8943 0.488245368548001 No Hit CTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGCT 8769 0.4787457941180163 No Hit TCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC 4463 0.24365862460357018 No Hit ACTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC 2690 0.14686123687734795 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCC 2309 0.12606044459100238 No Hit GCCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTG 1936 0.10569641434741471 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.0919051068947801E-4 0.0 0.0 0.4973627761905724 0.0 2 1.0919051068947801E-4 0.0 0.0 1.9867759372503973 0.0 3 1.0919051068947801E-4 0.0 0.0 2.6046304419868087 0.0 4 1.0919051068947801E-4 0.0 0.0 3.2739136772579642 0.0 5 1.0919051068947801E-4 0.0 0.0 4.894082474868439 0.0 6 1.0919051068947801E-4 0.0 0.0 5.649298642052214 0.0 7 1.0919051068947801E-4 0.0 0.0 6.572995767229853 0.0 8 1.0919051068947801E-4 0.0 0.0 8.293401453653269 0.0 9 1.0919051068947801E-4 0.0 0.0 8.876860947522495 0.0 10 1.0919051068947801E-4 0.0 0.0 10.549823357051332 0.0 11 1.0919051068947801E-4 0.0 0.0 13.14844832095022 0.0 12 1.0919051068947801E-4 0.0 0.0 15.204287256211712 0.0 13 1.0919051068947801E-4 0.0 0.0 15.933024724553288 0.0 14 1.0919051068947801E-4 0.0 0.0 16.195627902761483 0.0 15 1.0919051068947801E-4 0.0 0.0 16.716139067218226 0.0 16 1.0919051068947801E-4 0.0 0.0 17.84626085285432 0.0 17 1.0919051068947801E-4 0.0 0.0 19.422262088890903 0.0 18 1.0919051068947801E-4 0.0 0.0 21.031839406964497 0.0 19 1.0919051068947801E-4 0.0 0.0 22.114572510961363 0.0 20 1.6378576603421702E-4 0.0 0.0 23.10263744219045 0.0 21 3.2757153206843404E-4 0.0 0.0 24.262022284691326 0.0 22 4.913572981026511E-4 0.0 0.0 25.606430447555525 0.0 23 6.005478087921291E-4 0.0 0.0 26.84252162381576 0.0 24 9.281193408605631E-4 0.0 0.0 27.77719239531769 0.0 25 0.0014740718943079532 0.0 0.0 28.617194994051847 0.0 26 0.0015286671496526922 0.0 0.0 29.418871723533993 0.0 27 0.0015286671496526922 0.0 0.0 30.151048692962288 0.0 28 0.0015832624049974312 0.0 0.0 30.92995920096568 0.0 29 0.0015832624049974312 0.0 0.0 31.73496624102386 0.0 30 0.0015832624049974312 0.0 0.0 32.63393171553033 0.0 31 0.0015832624049974312 0.0 0.0 33.447018853379525 0.0 32 0.0015832624049974312 0.0 0.0 34.2349375785148 0.0 33 0.0016924529156869092 0.0 0.0 34.9774876464586 0.0 34 0.0016924529156869092 0.0 0.0 35.734341671302715 0.0 35 0.0016924529156869092 0.0 0.0 36.498402269852335 0.0 36 0.0016924529156869092 0.0 0.0 37.27283596691746 0.0 37 0.0016924529156869092 0.0 0.0 38.01352979617953 0.0 38 0.0018016434263763872 0.0 0.0 38.75356848237747 0.0 39 0.0019654291924106043 0.0 0.0 39.44878446393738 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTACG 40 6.8193913E-9 45.0 1 CCCGCTT 20 7.0343865E-4 45.0 33 CTTACCG 55 1.8189894E-12 45.0 12 CTAGCGA 25 3.8917162E-5 45.0 16 ATCCGGG 120 0.0 43.125004 3 GCGCGAG 225 0.0 43.0 1 TTTCGCG 65 0.0 41.538464 1 GTAAGCG 60 3.6379788E-12 41.250004 1 TAACGCG 55 6.184564E-11 40.909092 1 GCGTAAG 160 0.0 40.78125 1 CTACGCG 45 1.929402E-8 40.0 1 CGCGAGG 400 0.0 39.9375 2 CGTTAGG 300 0.0 39.750004 2 GCTAGCG 125 0.0 39.600002 1 GATCGCA 40 3.4597178E-7 39.375 9 GTCCGTG 40 3.4597178E-7 39.375 30 CATACGA 40 3.4597178E-7 39.375 18 ACGCATT 35 6.2503186E-6 38.57143 17 CGTAAGG 290 0.0 38.01724 2 TAGCGGA 30 1.1401864E-4 37.500004 3 >>END_MODULE