SRR3552790_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552790_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	504835
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGC	4078	0.80778868343122	TruSeq Adapter, Index 13 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGC	2396	0.4746105163073083	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGCT	2146	0.42508938564085297	TruSeq Adapter, Index 16 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGC	1201	0.2378995117216516	TruSeq Adapter, Index 13 (95% over 21bp)
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	791	0.1566848574286648	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	741	0.14678063129537375	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	728	0.14420553250071805	No Hit
ACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGC	682	0.13509364445809027	TruSeq Adapter, Index 16 (95% over 21bp)
GCCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTG	661	0.13093386948210803	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCC	643	0.12736834807412323	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTG	571	0.11310626244218408	No Hit
ACCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTG	549	0.10874840294353601	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATA	20	7.029524E-4	45.0	37
CTATGCG	25	3.8876868E-5	45.0	1
TCGTTCA	25	3.8876868E-5	45.0	16
TCCGCGC	20	7.029524E-4	45.0	13
GATCGTG	20	7.029524E-4	45.0	1
CTCAACG	20	7.029524E-4	45.0	1
TCCGATA	20	7.029524E-4	45.0	7
TTCACCG	35	1.2101191E-7	45.0	23
ACCGAAA	20	7.029524E-4	45.0	16
ATTCGGA	20	7.029524E-4	45.0	34
GCGCATT	20	7.029524E-4	45.0	7
TCTAGCG	35	1.2101191E-7	45.0	1
ATCCGAT	20	7.029524E-4	45.0	6
AAACGGA	20	7.029524E-4	45.0	23
TGCGCAC	20	7.029524E-4	45.0	23
CATAGCG	20	7.029524E-4	45.0	2
TGCGAAG	20	7.029524E-4	45.0	1
GCCCTAT	20	7.029524E-4	45.0	18
ACTACGG	25	3.8876868E-5	45.0	1
AATCTCC	20	7.029524E-4	45.0	44