SRR3552789_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552789_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1907420
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC	10457	0.548227448595485	No Hit
CCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC	7986	0.4186807310398339	No Hit
CTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGCT	7925	0.4154826939006616	No Hit
TCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC	5603	0.2937475752587264	No Hit
ACTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC	3287	0.1723270176468738	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCC	2294	0.12026716716821675	No Hit
GCCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTG	2120	0.11114489729582369	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCGG	20	7.0344575E-4	45.0	2
TCGCATA	20	7.0344575E-4	45.0	43
GATACCG	20	7.0344575E-4	45.0	12
TAAACGT	20	7.0344575E-4	45.0	36
TTATCCG	20	7.0344575E-4	45.0	1
AGACGCG	25	3.8917773E-5	45.0	1
TACGATA	25	3.8917773E-5	45.0	12
CTCGCGA	20	7.0344575E-4	45.0	13
TCTCCGA	20	7.0344575E-4	45.0	13
CTCGACG	40	6.8193913E-9	45.0	1
ATCGGCC	20	7.0344575E-4	45.0	10
TTCGCGC	25	3.8917773E-5	45.0	1
ATCGCCC	20	7.0344575E-4	45.0	9
TCGCGAA	20	7.0344575E-4	45.0	14
AAGTACG	60	0.0	44.999996	1
GTCGTAG	65	0.0	41.538464	1
CGTAAGG	390	0.0	40.961536	2
TAGACCG	50	1.0822987E-9	40.5	1
GTTCGCG	50	1.0822987E-9	40.5	1
GCGTAAG	265	0.0	39.905663	1