SRR3552788_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552788_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	757270
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC	4661	0.6155004159678846	No Hit
GCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC	3562	0.4703738428829876	No Hit
CTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGCT	3482	0.45980957914614334	No Hit
TCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC	1760	0.23241380221057217	No Hit
ACTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC	1125	0.14855995879937142	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCC	971	0.12822375110594636	No Hit
GCCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTG	826	0.10907602308291628	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGGCG	35	1.2111923E-7	45.000004	1
ACTGCGC	20	7.0317596E-4	45.0	36
GTTTACG	20	7.0317596E-4	45.0	1
TAAACGG	40	6.8102963E-9	45.0	2
GTTCGCA	20	7.0317596E-4	45.0	41
TAGTCGT	20	7.0317596E-4	45.0	17
ACGACTA	20	7.0317596E-4	45.0	27
TGCGTTG	20	7.0317596E-4	45.0	1
TTATACG	30	2.1645174E-6	44.999996	1
CGCGCGG	80	0.0	42.1875	2
GCGTAAG	65	0.0	41.53846	1
CGGGCCA	60	3.6379788E-12	41.249996	6
TTGGACG	55	6.002665E-11	40.909092	1
TCAAGCG	55	6.002665E-11	40.909092	17
CGTAAGG	105	0.0	40.714283	2
TTTTGCG	50	1.0804797E-9	40.5	1
CGTTTTT	760	0.0	39.375004	1
CAGCGCG	40	3.4561344E-7	39.375	1
GCGCGCG	80	0.0	39.375	1
TCGATTG	40	3.4561344E-7	39.375	1