SRR3552785_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552785_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	651431
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGC	4545	0.6976947673659989	No Hit
CTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGCT	3316	0.5090331900078442	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGC	3037	0.4662044023081493	No Hit
TCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGC	2477	0.38023981050947836	No Hit
ACTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTGC	1665	0.2555911524014055	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCC	866	0.13293810088865898	No Hit
GCCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTG	832	0.12771882210088253	No Hit
TGCATGGGGACTCACTGTGGTGGTTTTATCCTCTCGTTTTTCTCCCTTGGT	817	0.12541619910627527	No Hit
AGCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTG	718	0.11021888734186736	No Hit
ACCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTCTG	713	0.10945134634366493	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAAACGG	65	0.0	45.000004	2
TATTGCG	65	0.0	45.000004	1
TCCGGCA	20	7.0310343E-4	45.0	17
TTTAGCG	25	3.8889382E-5	45.0	1
GTCGCTT	20	7.0310343E-4	45.0	27
GTCGCGC	35	1.2108467E-7	45.0	9
CGAACGA	20	7.0310343E-4	45.0	16
ACACGCC	20	7.0310343E-4	45.0	32
GCGAATG	35	1.2108467E-7	45.0	1
CCCTATC	20	7.0310343E-4	45.0	20
GCGAAAG	50	2.1827873E-11	45.0	1
GCGCGAC	55	1.8189894E-12	45.0	9
CGTGAGT	20	7.0310343E-4	45.0	33
CGTTGCC	25	3.8889382E-5	45.0	15
CACGCCA	50	2.1827873E-11	45.0	27
CATCTAG	20	7.0310343E-4	45.0	20
ATTCGGC	25	3.8889382E-5	45.0	17
CGCGAGA	35	1.2108467E-7	45.0	41
CGCGACC	55	1.8189894E-12	45.0	10
CGCGAAG	20	7.0310343E-4	45.0	2