SRR3552783_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552783_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1204897
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	9254	0.7680324542263779	No Hit
CTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGCT	7259	0.6024581354256837	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	6156	0.5109150408707134	No Hit
TCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	4983	0.4135623210946662	No Hit
ACTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	2693	0.22350458171943327	No Hit
GCCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTG	1848	0.1533741058364325	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCC	1552	0.12880769061587835	No Hit
ACCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTG	1448	0.12017624743027827	No Hit
AGCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTG	1349	0.1119597774747551	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCATT	30	2.1655887E-6	45.000004	17
CGCGGAT	30	2.1655887E-6	45.000004	3
GCGCAAC	30	2.1655887E-6	45.000004	9
ACGAACT	30	2.1655887E-6	45.000004	10
TGATCCG	50	2.1827873E-11	45.0	1
GTTTGCG	70	0.0	45.0	1
CGGCGTG	20	7.033422E-4	45.0	31
CGGAACG	25	3.8909184E-5	45.0	36
CGTATTA	50	2.1827873E-11	45.0	17
CTCCGTA	55	1.8189894E-12	45.0	14
GATCGGT	20	7.033422E-4	45.0	9
ACGTTAC	25	3.8909184E-5	45.0	38
CGTGCGA	20	7.033422E-4	45.0	39
AACCCGA	20	7.033422E-4	45.0	23
GCGCGAC	20	7.033422E-4	45.0	9
GATCCGT	20	7.033422E-4	45.0	9
GATCCGA	20	7.033422E-4	45.0	9
GGTCCGA	20	7.033422E-4	45.0	8
CGCGCGT	20	7.033422E-4	45.0	2
GCGCCGG	20	7.033422E-4	45.0	1