SRR3552772_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552772_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	691234
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	2743	0.39682654499055314	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	2178	0.31508866751346143	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGCT	1903	0.27530474484762035	Illumina Single End Adapter 1 (95% over 22bp)
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1037	0.15002155565264438	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	936	0.13541000587355367	No Hit
TCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	921	0.13323997372814417	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	764	0.11052697060619124	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCGG	25	3.8891856E-5	45.000004	2
TATCGCG	25	3.8891856E-5	45.000004	1
TCGAAAG	25	3.8891856E-5	45.000004	1
TTCGTAA	20	7.031333E-4	45.0	24
CGGATAT	20	7.031333E-4	45.0	14
TGCGACA	20	7.031333E-4	45.0	30
GAACGAT	40	6.8084773E-9	45.0	43
GGTTACG	40	6.8084773E-9	45.0	1
TGCAACG	20	7.031333E-4	45.0	1
TCGTTGA	30	2.1642427E-6	44.999996	24
TCGTAAG	30	2.1642427E-6	44.999996	1
GTTACGG	60	3.6379788E-12	41.249996	2
CACAACG	115	0.0	41.08696	12
GGCCGAT	125	0.0	39.6	8
GCTTACG	40	3.4555524E-7	39.375	1
CATACGA	40	3.4555524E-7	39.375	18
CGCATGG	120	0.0	39.374996	2
CGTTAGG	115	0.0	39.130436	2
GTTAGCG	70	0.0	38.571426	1
TACGGGA	140	0.0	38.571426	4