SRR3552770_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552770_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1114596
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC	2091	0.1876016063219319	No Hit
CCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC	2031	0.18221848992818923	No Hit
CTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGCT	1936	0.17369522230476334	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1452	0.1302714167285725	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGATAG	50	2.1827873E-11	45.000004	1
ATTCACG	25	3.890729E-5	45.000004	1
TCGTAAG	45	3.8562575E-10	45.000004	1
CTCGATC	45	3.8562575E-10	45.000004	16
CCGTGAC	20	7.0331944E-4	45.0	31
GCGATAT	65	0.0	44.999996	9
CGATCTA	55	6.184564E-11	40.90909	10
TCGACAG	45	1.9281288E-8	40.000004	1
ATTGGGC	200	0.0	39.375004	4
ACGAACG	40	3.458099E-7	39.375	1
CTACGAA	275	0.0	38.454544	11
GCTACGA	275	0.0	38.454544	10
TCGAAAG	30	1.1398999E-4	37.499996	1
CGAATAT	285	0.0	37.105263	14
ACTAATC	700	0.0	36.964287	10
TCGATCA	55	2.748493E-9	36.81818	17
GTATACG	55	2.748493E-9	36.81818	1
CGCGTAT	55	2.748493E-9	36.81818	16
TAATGCG	55	2.748493E-9	36.81818	1
CGTAAGG	185	0.0	36.486485	2