SRR3552769_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552769_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1681495
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGCT	6855	0.40767293390702913	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC	6788	0.4036883844436052	No Hit
CCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC	5308	0.3156714709231963	No Hit
TCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC	3470	0.20636397967285064	No Hit
ACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC	2331	0.13862663879464404	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1887	0.11222156473852138	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAACTCG	20	7.034219E-4	45.0	41
TCGTTAC	25	3.8915794E-5	45.0	43
CGAGTAG	20	7.034219E-4	45.0	19
AATGCCG	20	7.034219E-4	45.0	38
TCGGACG	20	7.034219E-4	45.0	1
CATCGCG	25	3.8915794E-5	45.0	1
TAGGCGA	50	2.1827873E-11	45.0	5
AAATGCG	70	0.0	45.0	1
TAACGCG	120	0.0	44.999996	1
TATAGCG	65	0.0	41.53846	1
GTAAGCG	60	3.6379788E-12	41.249996	1
ACCGTCG	45	1.9292202E-8	40.000004	1
CTAACGG	85	0.0	39.705883	2
TAAACGG	80	0.0	39.375	2
TAAGACG	40	3.4594996E-7	39.375	1
CGTACCC	35	6.250015E-6	38.571426	36
GTACGAG	35	6.250015E-6	38.571426	1
TAGACCG	65	9.094947E-12	38.07692	1
TCGTAAG	65	9.094947E-12	38.07692	1
GCTTGCG	90	0.0	37.500004	1