SRR3552768_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552768_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	493395
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC	2058	0.417110023409236	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGCT	1976	0.40049047923063674	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC	1700	0.34455152565388786	No Hit
TCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC	849	0.17207308545891223	No Hit
ACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC	596	0.12079571134689246	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTCATA	20	7.029369E-4	45.0	18
CAACGTA	20	7.029369E-4	45.0	1
TAACGCG	20	7.029369E-4	45.0	1
TCGGACG	20	7.029369E-4	45.0	1
GCGATCA	20	7.029369E-4	45.0	9
ATGCGTA	20	7.029369E-4	45.0	12
AAATGCG	20	7.029369E-4	45.0	1
GCATACC	20	7.029369E-4	45.0	42
GCTACGA	70	0.0	41.785713	10
ACGGGTA	60	3.6379788E-12	41.250004	5
CTCGTAA	100	0.0	40.500004	33
CCGCTAT	45	1.9244908E-8	40.000004	25
ACGGGTC	45	1.9244908E-8	40.000004	5
AATGCGG	90	0.0	40.000004	2
GCGTATG	45	1.9244908E-8	40.000004	1
TATGGGC	170	0.0	39.705883	4
CGTAAGG	85	0.0	39.705883	2
CGACAGG	125	0.0	39.6	2
GACCCAC	40	3.4528784E-7	39.375	12
CGATGCA	40	3.4528784E-7	39.375	10