##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552768_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 493395 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.15096829112577 33.0 33.0 33.0 33.0 33.0 2 32.23004286626334 33.0 33.0 33.0 33.0 33.0 3 32.278494917865 33.0 33.0 33.0 33.0 33.0 4 32.26095927198289 33.0 33.0 33.0 33.0 33.0 5 32.29236210338573 33.0 33.0 33.0 33.0 33.0 6 35.76138996138996 37.0 37.0 37.0 33.0 37.0 7 36.06743481389151 37.0 37.0 37.0 37.0 37.0 8 36.09936865999858 37.0 37.0 37.0 37.0 37.0 9 35.984118201441035 37.0 37.0 37.0 37.0 37.0 10 35.97832568226269 37.0 37.0 37.0 37.0 37.0 11 35.93952918047406 37.0 37.0 37.0 33.0 37.0 12 35.91201572776376 37.0 37.0 37.0 33.0 37.0 13 35.92908521569939 37.0 37.0 37.0 33.0 37.0 14 35.972075112232595 37.0 37.0 37.0 37.0 37.0 15 36.011651921888145 37.0 37.0 37.0 37.0 37.0 16 36.02346395889703 37.0 37.0 37.0 37.0 37.0 17 36.02269378489851 37.0 37.0 37.0 37.0 37.0 18 36.00782942672706 37.0 37.0 37.0 37.0 37.0 19 36.00471427558042 37.0 37.0 37.0 37.0 37.0 20 35.97992683347014 37.0 37.0 37.0 37.0 37.0 21 35.89155747423464 37.0 37.0 37.0 37.0 37.0 22 35.92933653563575 37.0 37.0 37.0 37.0 37.0 23 35.96514354624591 37.0 37.0 37.0 37.0 37.0 24 35.97907964207177 37.0 37.0 37.0 37.0 37.0 25 35.97841080675726 37.0 37.0 37.0 37.0 37.0 26 35.92334539263673 37.0 37.0 37.0 37.0 37.0 27 35.91650503146566 37.0 37.0 37.0 37.0 37.0 28 35.921454412793 37.0 37.0 37.0 37.0 37.0 29 35.9218557139817 37.0 37.0 37.0 37.0 37.0 30 35.918582474487984 37.0 37.0 37.0 37.0 37.0 31 35.903813374679515 37.0 37.0 37.0 37.0 37.0 32 35.88875241946108 37.0 37.0 37.0 37.0 37.0 33 35.87627357391137 37.0 37.0 37.0 37.0 37.0 34 35.85875414221871 37.0 37.0 37.0 37.0 37.0 35 35.84263926468651 37.0 37.0 37.0 37.0 37.0 36 35.83336880187274 37.0 37.0 37.0 37.0 37.0 37 35.834055878150366 37.0 37.0 37.0 37.0 37.0 38 35.80227809361668 37.0 37.0 37.0 37.0 37.0 39 35.79704901752146 37.0 37.0 37.0 37.0 37.0 40 35.79830764397693 37.0 37.0 37.0 37.0 37.0 41 35.77857700219905 37.0 37.0 37.0 33.0 37.0 42 35.77119751922901 37.0 37.0 37.0 33.0 37.0 43 35.77066042420373 37.0 37.0 37.0 33.0 37.0 44 35.7560210379108 37.0 37.0 37.0 33.0 37.0 45 35.71196708519543 37.0 37.0 37.0 33.0 37.0 46 35.72639568702561 37.0 37.0 37.0 33.0 37.0 47 35.72651729344643 37.0 37.0 37.0 33.0 37.0 48 35.705777318375745 37.0 37.0 37.0 33.0 37.0 49 35.70110155149525 37.0 37.0 37.0 33.0 37.0 50 35.705775291602066 37.0 37.0 37.0 33.0 37.0 51 35.40684238794475 37.0 37.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 305.0 15 1282.0 16 895.0 17 453.0 18 311.0 19 254.0 20 236.0 21 290.0 22 368.0 23 539.0 24 808.0 25 1307.0 26 1920.0 27 2809.0 28 4018.0 29 4917.0 30 6402.0 31 8239.0 32 11213.0 33 15721.0 34 24414.0 35 51524.0 36 355170.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.879640044994375 20.216662106425886 24.509166083969234 12.394531764610504 2 29.777156233849144 23.43497603340123 26.86853332522624 19.919334407523383 3 31.965058421751337 24.146981627296586 26.2039542354503 17.684005715501776 4 29.835121961106214 26.529251411141175 25.09328225863659 18.542344369116023 5 25.56207501089391 29.63670081780318 24.640298341085742 20.16092583021717 6 27.023581511770487 35.81653644645771 22.378824268588048 14.781057773183756 7 82.13540874958197 6.090860264088611 7.02378418913852 4.7499467971908915 8 83.33992034779436 4.869729121697626 6.7408465833662685 5.049503947141742 9 77.93106942713241 7.3900221931717995 8.924289869171758 5.754618510524023 10 41.60925830217169 28.483263916334785 15.52468103649206 14.38279674500147 11 29.816272965879264 26.126126126126124 23.93376503612724 20.123835871867367 12 27.922658316359104 22.689528673780643 29.97213186189564 19.415681147964612 13 25.039167401372126 24.221364221364222 30.348301056962473 20.39116732030118 14 20.230646844820075 28.11641788019741 29.049949837351413 22.602985437631105 15 18.985397095633317 26.123085965605654 33.597624621246666 21.293892317514366 16 21.76349577924381 25.01423808510423 31.715967936440375 21.506298199211585 17 21.673507027837736 25.182054945834476 27.947182277890942 25.197255748436852 18 22.69277151166915 25.328590682921394 29.67764164614558 22.300996159263875 19 23.66015058928445 26.400348605073017 27.886581744849458 22.052919060793077 20 25.434793623770002 25.665035113854014 27.92346902583123 20.976702236544757 21 24.47207612561943 27.09026236585292 27.094923945317646 21.342737563210004 22 22.084942084942085 25.778534439951763 26.80286585798397 25.333657617122185 23 21.610069011643816 27.093505203741426 27.650259933724502 23.64616585089026 24 22.24890807567973 25.131182926458518 28.85659562824917 23.763313369612582 25 21.3184162790462 26.845630782638658 27.349892074301525 24.48606086401362 26 20.96433891709482 27.611751233798476 28.477791627397924 22.946118221708772 27 22.127707009596772 26.548505761104185 29.14743765137466 22.17634957792438 28 19.538706310359856 27.505142938213805 29.644402557788386 23.311748193637957 29 21.86564517273179 25.226238612065384 29.198512348118648 23.70960386708418 30 22.431115029540226 25.11496873701598 28.2205940473657 24.23332218607809 31 22.04724409448819 28.49846471893716 25.550927755652165 23.903363430922486 32 23.140891172387235 28.22181011157389 26.151866151866155 22.485432564172722 33 23.4757141843756 26.665653279826508 25.481206741049263 24.377425794748632 34 21.295108381722557 26.1994953333536 27.793552832922913 24.71184345200093 35 21.87071210693258 25.4143232095988 27.9271172184558 24.78784746501282 36 21.490489364505112 27.608711073278002 28.216135145269007 22.684664416947882 37 21.98076591777379 28.18370676638393 27.959950952076934 21.87557636376534 38 22.568935639801783 28.335106760303614 25.412904468022578 23.68305313187203 39 24.09104267371984 24.288855784918777 25.86690177241358 25.7531997689478 40 22.27647219773204 24.659552691048752 28.24207784837706 24.821897262842143 41 19.62302009546104 26.92913385826772 27.187952857244195 26.259893189027046 42 22.778504038346558 26.585595719453988 27.24591858450126 23.389981657698193 43 23.419369876062788 25.03937007874016 27.817266084982624 23.723993960214433 44 21.8970601647767 25.428510625361017 27.391846289484086 25.282582920378193 45 22.5332644230282 23.962747899755772 26.60647148836125 26.89751618885477 46 21.98380607829427 25.13766860223553 27.850707850707852 25.027817468762354 47 20.57013143627317 25.756847961572372 29.558467353742945 24.114553248411514 48 21.37678736103933 25.248127767812807 28.30612389667508 25.068960974472787 49 22.819850221425025 23.453216996524084 29.408080746663423 24.31885203538747 50 20.98095846127342 23.465174961237953 28.76762026368326 26.786246313805368 51 20.404746703959304 23.35390508618855 26.573029722636022 29.668318487216126 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 125.0 1 220.0 2 315.0 3 665.0 4 1015.0 5 773.0 6 531.0 7 556.5 8 582.0 9 576.0 10 570.0 11 601.0 12 632.0 13 694.5 14 757.0 15 796.0 16 835.0 17 852.5 18 870.0 19 872.5 20 875.0 21 1074.5 22 1274.0 23 1345.0 24 1416.0 25 2239.0 26 3473.0 27 3884.0 28 4851.5 29 5819.0 30 6668.5 31 7518.0 32 8619.5 33 9721.0 34 11591.5 35 13462.0 36 14504.0 37 15546.0 38 16170.0 39 16794.0 40 19473.5 41 22153.0 42 24457.0 43 26761.0 44 29762.0 45 32763.0 46 36579.0 47 40395.0 48 46479.5 49 52564.0 50 51830.5 51 51097.0 52 45310.5 53 39524.0 54 34242.0 55 28960.0 56 25602.0 57 22244.0 58 21918.0 59 21592.0 60 20820.0 61 20048.0 62 18286.0 63 16524.0 64 13921.0 65 11318.0 66 9449.5 67 7581.0 68 6160.5 69 4740.0 70 4170.0 71 3600.0 72 2996.5 73 2393.0 74 1978.0 75 1191.5 76 820.0 77 760.0 78 700.0 79 450.5 80 201.0 81 193.5 82 186.0 83 112.0 84 38.0 85 28.0 86 18.0 87 13.5 88 9.0 89 4.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 493395.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.398168582435726 #Duplication Level Percentage of deduplicated Percentage of total 1 69.38412345453924 21.785344051701557 2 11.541605285048094 7.2477053690374245 3 4.177266818543227 3.9347558334730555 4 2.0858023966746417 2.6196150112175554 5 1.2833602521555352 2.014758077458836 6 1.0036509841366115 1.890768167870931 7 0.7752940531565651 1.70399693673788 8 0.7124070518107097 1.7894621369654948 9 0.615747436180006 1.7400007624844172 >10 8.292025884894178 49.741872459357765 >50 0.08796697522169813 1.87653659702411 >100 0.03751532766807714 2.197213143203879 >500 0.0012936319885543843 0.29346270375539385 >1k 0.0019404479828315764 1.164508749711715 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC 2058 0.417110023409236 No Hit CTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGCT 1976 0.40049047923063674 No Hit GCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC 1700 0.34455152565388786 No Hit TCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC 849 0.17207308545891223 No Hit ACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC 596 0.12079571134689246 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.41163773447238017 0.0 2 0.0 0.0 0.0 1.4957589760739367 0.0 3 0.0 0.0 0.0 1.9842114330303307 0.0 4 0.0 0.0 0.0 2.498201238358719 0.0 5 0.0 0.0 0.0 3.8119559379401897 0.0 6 0.0 0.0 0.0 4.48849299243 0.0 7 0.0 0.0 0.0 5.230292159426018 0.0 8 0.0 0.0 0.0 6.569989562115547 0.0 9 0.0 0.0 0.0 7.035134121748295 0.0 10 0.0 0.0 0.0 8.287680256184194 0.0 11 0.0 0.0 0.0 10.309995034404484 0.0 12 0.0 0.0 0.0 11.832912777794668 0.0 13 0.0 0.0 0.0 12.418042339302183 0.0 14 0.0 0.0 0.0 12.624773254694514 0.0 15 0.0 0.0 0.0 13.051611791769272 0.0 16 0.0 0.0 0.0 13.976225944729881 0.0 17 0.0 0.0 0.0 15.106152271506602 0.0 18 0.0 0.0 0.0 16.34917256964501 0.0 19 0.0 0.0 0.0 17.09482260663363 0.0 20 0.0 0.0 0.0 17.811287102625684 0.0 21 6.080321040950963E-4 0.0 0.0 18.65989724257441 0.0 22 0.0012160642081901925 0.0 0.0 19.610454098643075 0.0 23 0.0014187415762218912 0.0 0.0 20.50466664639893 0.0 24 0.0014187415762218912 0.0 0.0 21.216672240294287 0.0 25 0.0018240963122852887 0.0 0.0 21.836459631735224 0.0 26 0.002432128416380385 0.0 0.0 22.407807132216583 0.0 27 0.0026348057844120835 0.0 0.0 22.95037444643744 0.0 28 0.0028374831524437824 0.0 0.0 23.5051024027402 0.0 29 0.0028374831524437824 0.0 0.0 24.080706127950222 0.0 30 0.0028374831524437824 0.0 0.0 24.766769018737524 0.0 31 0.0028374831524437824 0.0 0.0 25.397906342788232 0.0 32 0.0028374831524437824 0.0 0.0 25.973307390630225 0.0 33 0.0028374831524437824 0.0 0.0 26.53573708691819 0.0 34 0.003040160520475481 0.0 0.0 27.07506156325054 0.0 35 0.0036481926245705773 0.0 0.0 27.686539182602175 0.0 36 0.0036481926245705773 0.0 0.0 28.258292037819597 0.0 37 0.0036481926245705773 0.0 0.0 28.869972334539263 0.0 38 0.0036481926245705773 0.0 0.0 29.428753838202656 0.0 39 0.0036481926245705773 0.0 0.0 29.995237081851254 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTCATA 20 7.029369E-4 45.0 18 CAACGTA 20 7.029369E-4 45.0 1 TAACGCG 20 7.029369E-4 45.0 1 TCGGACG 20 7.029369E-4 45.0 1 GCGATCA 20 7.029369E-4 45.0 9 ATGCGTA 20 7.029369E-4 45.0 12 AAATGCG 20 7.029369E-4 45.0 1 GCATACC 20 7.029369E-4 45.0 42 GCTACGA 70 0.0 41.785713 10 ACGGGTA 60 3.6379788E-12 41.250004 5 CTCGTAA 100 0.0 40.500004 33 CCGCTAT 45 1.9244908E-8 40.000004 25 ACGGGTC 45 1.9244908E-8 40.000004 5 AATGCGG 90 0.0 40.000004 2 GCGTATG 45 1.9244908E-8 40.000004 1 TATGGGC 170 0.0 39.705883 4 CGTAAGG 85 0.0 39.705883 2 CGACAGG 125 0.0 39.6 2 GACCCAC 40 3.4528784E-7 39.375 12 CGATGCA 40 3.4528784E-7 39.375 10 >>END_MODULE