SRR3552766_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552766_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1080134
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTGC	7389	0.6840817898519999	No Hit
GCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTGC	5034	0.46605328598118384	No Hit
CTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTGCT	4823	0.4465186726832041	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTGC	2315	0.21432525964371088	No Hit
ACTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTGC	1434	0.13276130554171983	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCC	1347	0.1247067493477661	No Hit
GCCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTG	1132	0.1048018116270759	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTGCG	20	7.033099E-4	45.0	2
TTGACCG	35	1.211829E-7	45.0	1
GTACGCG	20	7.033099E-4	45.0	1
CTTCGCG	30	2.1653796E-6	44.999996	1
ACGATAG	30	2.1653796E-6	44.999996	1
TAGTACG	30	2.1653796E-6	44.999996	1
TGTAGCG	70	0.0	41.785713	1
CGCGAGG	135	0.0	41.666664	2
GTTCGCG	50	1.0822987E-9	40.5	1
CGTGCGG	95	0.0	40.263157	2
GGTCGTT	40	3.4579716E-7	39.375	8
TAGTGCG	40	3.4579716E-7	39.375	1
GCGTCCG	40	3.4579716E-7	39.375	1
TATCCGG	40	3.4579716E-7	39.375	2
TTCGCGG	115	0.0	39.130432	2
TCATGCG	35	6.2479394E-6	38.571426	1
GACGTAG	65	9.094947E-12	38.07692	1
GGATCGC	65	9.094947E-12	38.07692	8
CGGTAGT	155	0.0	37.741936	12
TTGCGAG	90	0.0	37.5	1