SRR3552765_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552765_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1095313
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	4204	0.3838172284999813	No Hit
CCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	3435	0.3136089866549562	No Hit
CTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGCT	3342	0.30511826299879574	No Hit
TCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	2166	0.19775169289509026	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	2126	0.194099768741903	No Hit
ACTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	1414	0.12909551881516973	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1136	0.10371464595051824	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATAG	20	7.03314E-4	45.000004	1
ACGCATT	30	2.1654068E-6	45.000004	17
CGTGCAA	20	7.03314E-4	45.000004	45
CGACAGT	25	3.8906845E-5	45.000004	16
TCTAGCG	30	2.1654068E-6	45.000004	1
GCCGATA	50	2.1827873E-11	45.000004	9
TGCGACG	40	6.8139343E-9	45.000004	1
ATGACCG	20	7.03314E-4	45.000004	38
ACGCTAA	25	3.8906845E-5	45.000004	39
CCGCGTA	20	7.03314E-4	45.000004	33
CACGTAT	30	2.1654068E-6	45.000004	30
CGCCCAT	20	7.03314E-4	45.000004	24
CGGACTA	25	3.8906845E-5	45.000004	26
AGTAACG	55	1.8189894E-12	45.0	1
TAGCCCG	70	0.0	41.785717	1
AAGGGCG	355	0.0	40.56338	5
TATCCGT	45	1.9281288E-8	40.0	27
CGTAAGG	210	0.0	39.642857	2
CGACCAA	80	0.0	39.375004	29
CGTGTAC	335	0.0	38.955223	18