SRR3552763_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552763_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	572559
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGCT	2359	0.41200994133355695	TruSeq Adapter, Index 20 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGC	2222	0.38808227623703406	TruSeq Adapter, Index 22 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGC	1939	0.3386550556361877	TruSeq Adapter, Index 22 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGC	1221	0.21325313199163756	TruSeq Adapter, Index 22 (95% over 22bp)
ACTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGC	730	0.12749777752161787	TruSeq Adapter, Index 20 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	632	0.11038163752556504	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTAT	20	7.0303166E-4	45.000004	41
GATACGT	20	7.0303166E-4	45.000004	11
CGTATAG	20	7.0303166E-4	45.000004	15
CTATCGA	20	7.0303166E-4	45.000004	40
GTTTATA	20	7.0303166E-4	45.000004	28
ACTCTCG	20	7.0303166E-4	45.000004	44
ATTCGTT	20	7.0303166E-4	45.000004	36
TCAATTG	20	7.0303166E-4	45.000004	17
ACTACGC	20	7.0303166E-4	45.000004	36
GTCGTAA	20	7.0303166E-4	45.000004	26
TCGTAAG	20	7.0303166E-4	45.000004	1
GTATACG	20	7.0303166E-4	45.000004	1
CGATGAA	20	7.0303166E-4	45.000004	10
ACCGTAT	20	7.0303166E-4	45.000004	13
ACGTAGG	20	7.0303166E-4	45.000004	2
CAGTACG	20	7.0303166E-4	45.000004	1
GATTCGT	20	7.0303166E-4	45.000004	35
TTACCGT	20	7.0303166E-4	45.000004	38
TATCGCG	20	7.0303166E-4	45.000004	1
AGTACGA	20	7.0303166E-4	45.000004	33