SRR3552762_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552762_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	224419
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGC	1271	0.5663513338888418	TruSeq Adapter, Index 22 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGCT	941	0.4193049608099136	TruSeq Adapter, Index 20 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGC	759	0.338206658081535	TruSeq Adapter, Index 22 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGC	402	0.1791292181143308	TruSeq Adapter, Index 22 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	234	0.10426924636505822	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCC	227	0.10115008087550519	No Hit
ACTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGC	226	0.10070448580556904	TruSeq Adapter, Index 20 (95% over 21bp)
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	225	0.10025889073563289	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTCCCC	20	7.0211437E-4	45.0	15
TTGGACG	20	7.0211437E-4	45.0	1
ACGCATT	20	7.0211437E-4	45.0	17
ACTCTAG	20	7.0211437E-4	45.0	41
CCATGTA	25	3.8807426E-5	45.0	30
TGTGATA	20	7.0211437E-4	45.0	37
CTACGAA	20	7.0211437E-4	45.0	11
TACGAAT	20	7.0211437E-4	45.0	12
CGCTACA	20	7.0211437E-4	45.0	28
GGGCGAA	20	7.0211437E-4	45.0	7
CGAATAT	20	7.0211437E-4	45.0	14
GCGATAT	20	7.0211437E-4	45.0	9
CATAAGG	40	6.7720975E-9	45.0	2
CTCGAGG	25	3.8807426E-5	45.0	2
CGTAAGG	40	6.7720975E-9	45.0	2
CGCACGG	25	3.8807426E-5	45.0	2
GCTACGA	20	7.0211437E-4	45.0	10
TAGTGCG	25	3.8807426E-5	45.0	1
AAAGGGT	45	3.8198777E-10	45.0	4
TATACGG	20	7.0211437E-4	45.0	2