SRR3552759_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552759_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	489671
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	4468	0.9124493792771065	No Hit
CCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	3841	0.7844042224268948	No Hit
CTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGCT	3827	0.781545159913493	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	2199	0.44907703335504856	No Hit
ACTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	1410	0.2879484388497583	No Hit
GCCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTG	879	0.17950828209144506	No Hit
CGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTG	871	0.17787453208378687	No Hit
ACCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTG	823	0.16807203203783766	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCC	793	0.16194546950911937	No Hit
AGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTG	613	0.1251860943368098	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	579	0.11824265680426245	No Hit
GGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTG	521	0.10639796924874047	No Hit
GGCCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCT	493	0.10067984422193677	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	490	0.10006718796906494	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCACGG	35	1.21001E-7	45.000004	2
GACCTAG	35	1.21001E-7	45.000004	10
TGGTACG	35	1.21001E-7	45.000004	1
TTTAGCG	20	7.0293155E-4	45.0	1
CTTCGAC	20	7.0293155E-4	45.0	21
AACGTAA	20	7.0293155E-4	45.0	20
CGTGGGT	25	3.8875147E-5	45.0	4
TCGTTGA	25	3.8875147E-5	45.0	24
TACCATC	25	3.8875147E-5	45.0	39
GGCGTTG	20	7.0293155E-4	45.0	1
CGTTGAT	25	3.8875147E-5	45.0	25
TAGCGCG	20	7.0293155E-4	45.0	1
ATAGCGG	50	2.1827873E-11	45.0	2
GATCATA	20	7.0293155E-4	45.0	8
GCTTGCG	20	7.0293155E-4	45.0	1
CGTTCAT	20	7.0293155E-4	45.0	10
TCGGCCG	20	7.0293155E-4	45.0	11
AGTATAG	25	3.8875147E-5	45.0	1
AACGGTT	20	7.0293155E-4	45.0	16
AAACGTA	20	7.0293155E-4	45.0	19