SRR3552756_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552756_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	721786
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC	4157	0.5759324786016908	TruSeq Adapter, Index 20 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC	3801	0.5266103803620464	TruSeq Adapter, Index 20 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGCT	3382	0.4685599332766221	TruSeq Adapter, Index 22 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC	1536	0.21280545757329733	TruSeq Adapter, Index 20 (95% over 23bp)
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1099	0.15226119653193607	No Hit
ACTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC	1023	0.14173175982909061	TruSeq Adapter, Index 22 (95% over 21bp)
GCCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTG	827	0.11457689675333131	TruSeq Adapter, Index 20 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	771	0.10681836444597154	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCC	744	0.10307764351206591	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	727	0.10072237477590311	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGCTA	25	3.889357E-5	45.000004	1
CACGAGG	25	3.889357E-5	45.000004	2
CCCGTCG	25	3.889357E-5	45.000004	25
CGAATAT	25	3.889357E-5	45.000004	14
TTAACGG	25	3.889357E-5	45.000004	1
TGCGTTA	25	3.889357E-5	45.000004	30
CTATGCG	20	7.031541E-4	45.0	1
TCGCAAG	20	7.031541E-4	45.0	1
CGTTCTA	20	7.031541E-4	45.0	24
TCGATAG	20	7.031541E-4	45.0	1
ACCTAGT	20	7.031541E-4	45.0	11
ACAGCGT	20	7.031541E-4	45.0	45
TAGGCGA	20	7.031541E-4	45.0	1
ACGTAAT	20	7.031541E-4	45.0	29
TATGTTA	40	6.8084773E-9	45.0	41
CGATAAT	20	7.031541E-4	45.0	10
AATCGTA	20	7.031541E-4	45.0	17
TACGTAG	20	7.031541E-4	45.0	1
TCTATAC	20	7.031541E-4	45.0	41
TTGTGCG	100	0.0	40.500004	1