##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552756_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 721786 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.386063182162026 33.0 33.0 33.0 27.0 33.0 2 31.56981986350525 33.0 33.0 33.0 27.0 33.0 3 31.6797804335357 33.0 33.0 33.0 27.0 33.0 4 31.605924747778428 33.0 33.0 33.0 27.0 33.0 5 31.6934700867016 33.0 33.0 33.0 27.0 33.0 6 35.06903431210913 37.0 37.0 37.0 33.0 37.0 7 35.38433690872364 37.0 37.0 37.0 33.0 37.0 8 35.45756498463533 37.0 37.0 37.0 33.0 37.0 9 35.33089031929131 37.0 37.0 37.0 33.0 37.0 10 35.369461308476474 37.0 37.0 37.0 33.0 37.0 11 35.356317523476484 37.0 37.0 37.0 33.0 37.0 12 35.35926299484889 37.0 37.0 37.0 33.0 37.0 13 35.39371364919796 37.0 37.0 37.0 33.0 37.0 14 35.466035639372336 37.0 37.0 37.0 33.0 37.0 15 35.51799009678769 37.0 37.0 37.0 33.0 37.0 16 35.5263942498192 37.0 37.0 37.0 33.0 37.0 17 35.53784085587695 37.0 37.0 37.0 33.0 37.0 18 35.53397544424525 37.0 37.0 37.0 33.0 37.0 19 35.51157822401654 37.0 37.0 37.0 33.0 37.0 20 35.49065789583062 37.0 37.0 37.0 33.0 37.0 21 35.4120417963219 37.0 37.0 37.0 33.0 37.0 22 35.45657022995736 37.0 37.0 37.0 33.0 37.0 23 35.473468590413226 37.0 37.0 37.0 33.0 37.0 24 35.478227618712474 37.0 37.0 37.0 33.0 37.0 25 35.47393410235167 37.0 37.0 37.0 33.0 37.0 26 35.41525604542066 37.0 37.0 37.0 33.0 37.0 27 35.41494016231958 37.0 37.0 37.0 33.0 37.0 28 35.37928555001067 37.0 37.0 37.0 33.0 37.0 29 35.39086238857501 37.0 37.0 37.0 33.0 37.0 30 35.34522559318136 37.0 37.0 37.0 33.0 37.0 31 35.34187418431502 37.0 37.0 37.0 33.0 37.0 32 35.32337008476197 37.0 37.0 37.0 33.0 37.0 33 35.3065326842028 37.0 37.0 37.0 33.0 37.0 34 35.30052813437778 37.0 37.0 37.0 33.0 37.0 35 35.27173428135209 37.0 37.0 37.0 33.0 37.0 36 35.24626412814879 37.0 37.0 37.0 33.0 37.0 37 35.254073922187466 37.0 37.0 37.0 33.0 37.0 38 35.217730740136275 37.0 37.0 37.0 33.0 37.0 39 35.234975463641575 37.0 37.0 37.0 33.0 37.0 40 35.21960110060323 37.0 37.0 37.0 33.0 37.0 41 35.20769729532022 37.0 37.0 37.0 33.0 37.0 42 35.1921178853566 37.0 37.0 37.0 33.0 37.0 43 35.17713976164681 37.0 37.0 37.0 33.0 37.0 44 35.11942597944543 37.0 37.0 37.0 33.0 37.0 45 35.095802634021716 37.0 37.0 37.0 33.0 37.0 46 35.097902979553496 37.0 37.0 37.0 33.0 37.0 47 35.08688863458144 37.0 37.0 37.0 33.0 37.0 48 35.07754098860327 37.0 37.0 37.0 33.0 37.0 49 35.0581280324085 37.0 37.0 37.0 33.0 37.0 50 35.068164248128944 37.0 37.0 37.0 33.0 37.0 51 34.6527724283929 37.0 37.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 509.0 15 2004.0 16 1967.0 17 1624.0 18 1598.0 19 1627.0 20 1687.0 21 1883.0 22 2155.0 23 2604.0 24 3153.0 25 4196.0 26 5399.0 27 7212.0 28 9030.0 29 10886.0 30 12816.0 31 15772.0 32 20349.0 33 27658.0 34 41617.0 35 84766.0 36 461274.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.289027495684316 18.80848340089722 23.27185620114549 13.630632902272973 2 29.610161460599127 23.556566627781642 26.01615991443447 20.81711199718476 3 32.33021976042761 23.94477033358918 25.149836655185887 18.575173250797327 4 29.05708894326019 26.267342397885248 24.98621475063246 19.689353908222103 5 25.30431457523421 30.14397619238943 24.244859279620275 20.30684995275608 6 26.85241886099204 34.83968932619918 22.748570906058028 15.559320906750754 7 79.75757357443895 7.012327753655516 7.97826502592181 5.251833645983712 8 80.34126458534801 5.586420351738604 7.825449648510778 6.246865414402607 9 74.88452255931813 7.756177038623637 10.737531622946413 6.6217687791118145 10 40.98430836840837 25.839237668782715 17.356668042882518 15.819785919926405 11 31.120165810919026 25.837852216584974 22.454162314037678 20.587819658458322 12 26.993457894722255 23.55421135904548 29.478404956593785 19.97392578963848 13 23.709936186071772 26.322621940575186 29.94128453585966 20.026157337493384 14 21.03351963047219 28.590053007401085 28.24161177966877 22.13481558245796 15 19.886919391620232 25.67145940763606 33.107319898141554 21.334301302602157 16 21.453173101168492 25.473616833798385 30.074703582502295 22.998506482530836 17 21.21529095881605 25.645412906318494 27.865738598421142 25.27355753644432 18 23.26285076186016 24.071539209682648 30.193436835848853 22.472173192608334 19 23.169748374171846 26.99124117120587 27.31003372190649 22.52897673271579 20 25.640979459285717 25.877337604220642 27.51826718722724 20.963415749266403 21 23.908748576447866 27.295209383390645 27.441651680692058 21.354390359469427 22 21.872272390985696 25.46017794748028 26.535150307708932 26.132399353825097 23 21.55347984028507 26.697248214844844 26.72135508308557 25.027916861784515 24 22.21572599080614 24.89699162909782 28.927964798430562 23.95931758166548 25 21.049175240306685 26.97184484043747 26.18532362777887 25.793656291476974 26 20.77083789378015 28.357712673839615 27.414635362836076 23.45681406954416 27 21.98560238076106 27.015348039446597 26.675219524900733 24.323830054891616 28 18.334381658829628 28.69590155530864 27.930716306495277 25.039000479366457 29 20.89954640295046 26.203611596789077 26.74282959215058 26.154012408109885 30 21.371847057160988 26.539999390401032 26.21275558129418 25.875397971143805 31 22.260337551573457 28.891527405629922 24.455586558896957 24.39254848389966 32 22.142851205204867 27.84758917463071 24.79349834992643 25.216061270237994 33 22.503900047936646 26.48291875985403 24.403632101481605 26.609549090727725 34 19.48209025943978 26.622156705727186 28.292734965765476 25.603018069067563 35 21.144355806291614 25.49522988808317 26.022394449324317 27.3380198563009 36 21.97271767532205 28.58021629679711 25.029717949641583 24.417348078239257 37 21.245355271507066 27.76584749496388 27.181602303175733 23.80719493035332 38 19.620219843554736 28.747856012723993 25.614101686649505 26.017822457071766 39 22.716151324630847 24.185284835117336 27.142394005979614 25.95616983427221 40 22.117774520425723 23.64578974931628 29.734713613176204 24.501722117081794 41 19.64169435261975 25.7450269193362 28.557910516413454 26.055368211630594 42 21.900119980160323 25.084858947111748 27.40091938607842 25.614101686649505 43 23.369530581086362 23.323672113341072 27.541958419808644 25.764838885763925 44 20.707245637903757 24.87205348953845 26.136971346077647 28.28372952648015 45 21.366859429249114 23.137328792744665 26.93817835203232 28.557633425973904 46 21.389026664412995 25.250004849082693 28.16956826538614 25.191400221118172 47 19.42805762372781 25.068094975519063 30.446281861936917 25.057565538816213 48 19.997755567439658 24.032608002926075 29.2682318581962 26.70140457143807 49 22.309521104593326 23.123197180327686 29.594644395984403 24.972637319094577 50 20.513697965879082 22.84541401468025 28.977702532329523 27.663185487111136 51 19.901051004037207 22.455963401894742 26.76305719423763 30.87992839983042 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 277.0 1 362.5 2 448.0 3 978.0 4 1508.0 5 1185.5 6 863.0 7 854.0 8 845.0 9 912.0 10 979.0 11 1019.0 12 1059.0 13 1216.5 14 1374.0 15 1410.5 16 1447.0 17 1446.0 18 1445.0 19 1489.0 20 1533.0 21 1835.0 22 2137.0 23 2336.0 24 2535.0 25 3436.0 26 5008.5 27 5680.0 28 6708.0 29 7736.0 30 9256.5 31 10777.0 32 11936.5 33 13096.0 34 14779.0 35 16462.0 36 18127.0 37 19792.0 38 20761.0 39 21730.0 40 24547.5 41 27365.0 42 31382.0 43 35399.0 44 40628.0 45 45857.0 46 53440.5 47 61024.0 48 70064.0 49 79104.0 50 80179.0 51 81254.0 52 69639.5 53 58025.0 54 51202.5 55 44380.0 56 39553.5 57 34727.0 58 32225.5 59 29724.0 60 28824.5 61 27925.0 62 26147.5 63 24370.0 64 21147.0 65 17924.0 66 15360.5 67 12797.0 68 10762.0 69 8727.0 70 7549.5 71 6372.0 72 5114.5 73 3857.0 74 3499.0 75 2366.0 76 1591.0 77 1379.5 78 1168.0 79 914.5 80 661.0 81 446.0 82 231.0 83 151.5 84 72.0 85 47.0 86 22.0 87 13.5 88 5.0 89 4.0 90 3.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 721786.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.429904574142572 #Duplication Level Percentage of deduplicated Percentage of total 1 69.11178344382569 19.648414082567708 2 12.481222507491282 7.0967992971323515 3 5.137356299288707 4.3816364805644445 4 2.6396404596243506 3.0017890550866446 5 1.4915623429477105 2.120248753819396 6 0.9709080104934535 1.6561693253159697 7 0.6609884068892872 1.3154286132733868 8 0.4842261148121711 1.1013201789134264 9 0.3834014409646375 0.9810059742192061 >10 6.032449109613255 43.27820449205514 >50 0.5370681616373693 9.37620814503802 >100 0.06255206977995936 3.2036686119199924 >500 0.00390950436124746 0.7553816836380154 >1k 0.002932128270935595 2.0837253064563095 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC 4157 0.5759324786016908 TruSeq Adapter, Index 20 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC 3801 0.5266103803620464 TruSeq Adapter, Index 20 (95% over 23bp) CTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGCT 3382 0.4685599332766221 TruSeq Adapter, Index 22 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC 1536 0.21280545757329733 TruSeq Adapter, Index 20 (95% over 23bp) GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 1099 0.15226119653193607 No Hit ACTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC 1023 0.14173175982909061 TruSeq Adapter, Index 22 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTG 827 0.11457689675333131 TruSeq Adapter, Index 20 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 771 0.10681836444597154 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCC 744 0.10307764351206591 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 727 0.10072237477590311 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4806133673969847 0.0 2 0.0 0.0 0.0 1.9825820949699773 0.0 3 1.3854521977428212E-4 0.0 0.0 2.60063232038305 0.0 4 1.3854521977428212E-4 0.0 0.0 3.2540115768385642 0.0 5 1.3854521977428212E-4 0.0 0.0 4.778424630014991 0.0 6 1.3854521977428212E-4 0.0 0.0 5.5099433904232 0.0 7 1.3854521977428212E-4 0.0 0.0 6.368508117364427 0.0 8 1.3854521977428212E-4 0.0 0.0 7.901372428947084 0.0 9 1.3854521977428212E-4 0.0 0.0 8.460956571615409 0.0 10 1.3854521977428212E-4 0.0 0.0 9.968467107979373 0.0 11 1.3854521977428212E-4 0.0 0.0 12.19530442541141 0.0 12 1.3854521977428212E-4 0.0 0.0 13.826674388253583 0.0 13 1.3854521977428212E-4 0.0 0.0 14.455669686028823 0.0 14 2.7709043954856423E-4 0.0 0.0 14.681498394260903 0.0 15 2.7709043954856423E-4 0.0 0.0 15.176936100173736 0.0 16 2.7709043954856423E-4 0.0 0.0 16.181250398317506 0.0 17 2.7709043954856423E-4 0.0 0.0 17.417627939583202 0.0 18 2.7709043954856423E-4 0.0 0.0 18.878171646443683 0.0 19 2.7709043954856423E-4 0.0 0.0 19.70029898058427 0.0 20 2.7709043954856423E-4 0.0 0.0 20.454539157035466 0.0 21 5.541808790971285E-4 0.0 0.0 21.40274264117065 0.0 22 0.0012469069779685391 0.0 0.0 22.334597789372474 0.0 23 0.0034636304943570532 0.0 0.0 23.284325270925176 0.0 24 0.004156356593228464 0.0 0.0 24.067521398309193 0.0 25 0.00457199225255131 0.0 0.0 24.732399908005974 0.0 26 0.004849082692099874 0.0 0.0 25.36056393446257 0.0 27 0.004987627911874157 0.0 0.0 25.967114906634375 0.0 28 0.004987627911874157 0.0 0.0 26.564106258641758 0.0 29 0.005264718351422721 0.0 0.0 27.157079799275685 0.0 30 0.005264718351422721 0.0 0.0 27.84218591105951 0.0 31 0.005264718351422721 0.0 0.0 28.49307135355909 0.0 32 0.005264718351422721 0.0 0.0 29.123313558312297 0.0 33 0.005264718351422721 0.0 0.0 29.696336587298727 0.0 34 0.005264718351422721 0.0 0.0 30.305242828206698 0.0 35 0.0060959896700684135 0.0 0.0 30.941719567849752 0.0 36 0.0063730801096169775 0.0 0.0 31.57154613694364 0.0 37 0.006788715768939824 0.0 0.0 32.13168446049106 0.0 38 0.006788715768939824 0.0 0.0 32.72410382024589 0.0 39 0.0069272609887141064 0.0 0.0 33.26498435824469 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACGCTA 25 3.889357E-5 45.000004 1 CACGAGG 25 3.889357E-5 45.000004 2 CCCGTCG 25 3.889357E-5 45.000004 25 CGAATAT 25 3.889357E-5 45.000004 14 TTAACGG 25 3.889357E-5 45.000004 1 TGCGTTA 25 3.889357E-5 45.000004 30 CTATGCG 20 7.031541E-4 45.0 1 TCGCAAG 20 7.031541E-4 45.0 1 CGTTCTA 20 7.031541E-4 45.0 24 TCGATAG 20 7.031541E-4 45.0 1 ACCTAGT 20 7.031541E-4 45.0 11 ACAGCGT 20 7.031541E-4 45.0 45 TAGGCGA 20 7.031541E-4 45.0 1 ACGTAAT 20 7.031541E-4 45.0 29 TATGTTA 40 6.8084773E-9 45.0 41 CGATAAT 20 7.031541E-4 45.0 10 AATCGTA 20 7.031541E-4 45.0 17 TACGTAG 20 7.031541E-4 45.0 1 TCTATAC 20 7.031541E-4 45.0 41 TTGTGCG 100 0.0 40.500004 1 >>END_MODULE